genome.fa.s7418.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007418.1 Hibiscus syriacus cultivar Beakdansim tig00020063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1198774

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 645 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203134--203531	49	8.1	49	82	1	447	30	20	13	34	1.92
205505--205574	29	2.4	30	90	4	115	44	25	1	28	1.63
212777--212932	29	5.3	29	96	0	285	42	23	0	33	1.59
217201--217382	45	4.0	45	82	0	220	24	20	14	40	1.90
217339--217729	49	8.0	48	80	7	364	29	21	13	36	1.91
217339--217728	146	2.7	146	83	4	480	29	21	13	35	1.91
218605--218680	38	2.0	37	97	2	143	22	7	19	50	1.73
221353--221392	21	1.9	21	85	10	55	50	0	5	45	1.23
221368--221463	42	2.3	43	82	5	108	48	2	5	43	1.36
221449--221508	24	2.5	24	78	8	68	41	1	1	55	1.20
222812--222912	31	3.3	31	87	0	139	29	30	25	13	1.94
225549--225596	17	2.8	17	83	0	60	27	20	31	20	1.98
230611--230635	2	12.5	2	100	0	50	52	0	0	48	1.00
230852--230963	24	4.7	24	88	4	154	39	19	14	26	1.90
230852--230983	48	2.8	48	81	6	108	41	18	13	25	1.88
235547--235664	24	4.9	24	87	5	166	40	20	15	23	1.90
235547--235664	48	2.4	48	91	4	184	40	20	15	23	1.90
235547--235678	48	2.8	48	86	6	144	42	19	15	22	1.88
238121--238469	28	12.4	28	84	6	239	43	12	4	40	1.61
238137--238353	28	7.6	28	89	4	310	41	12	3	41	1.61
238146--238353	85	2.5	84	92	0	335	42	12	3	40	1.62
238376--238462	26	3.3	26	91	3	129	41	9	3	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242043--242222	28	6.4	28	91	2	272	42	14	3	39	1.64
242043--242222	57	3.2	56	92	4	290	42	14	3	39	1.64
242035--242222	85	2.2	85	89	3	290	40	14	3	40	1.63
242214--242291	26	2.9	26	75	5	75	39	14	5	41	1.67
242214--242301	29	3.1	29	77	9	101	40	13	4	40	1.65
247170--247254	44	1.9	44	90	4	136	44	16	12	25	1.83
249647--249673	2	13.5	2	100	0	54	48	0	0	51	1.00
251184--251253	30	2.3	30	82	4	79	37	7	10	45	1.65
256469--256503	13	2.6	14	86	9	54	31	0	0	68	0.90
260330--260406	31	2.5	31	82	6	93	19	25	25	28	1.99
266692--266727	13	2.8	13	95	0	63	19	50	13	16	1.79
266705--266739	18	1.9	18	88	0	52	20	48	14	17	1.81
269309--269367	12	4.9	12	77	8	66	16	16	18	47	1.83
269272--269380	48	2.3	47	85	9	141	18	17	16	47	1.83
269272--269380	24	4.5	24	80	8	125	18	17	16	47	1.83
269322--269380	12	4.8	13	71	12	54	16	15	18	49	1.80
271498--271573	13	5.5	13	75	14	71	17	42	21	19	1.90
271494--271563	31	2.3	31	87	0	95	18	45	18	17	1.85
274136--274196	12	5.2	12	78	9	63	18	18	16	47	1.83
274099--274192	48	2.0	48	83	8	120	20	18	15	45	1.85
274113--274192	24	3.3	24	85	3	108	20	17	16	46	1.84
276962--276994	15	2.3	15	90	10	52	72	3	3	21	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277090--277137	5	9.6	5	76	0	51	37	10	0	52	1.36
277090--277138	10	4.9	10	87	0	71	36	12	0	51	1.40
277090--277138	20	2.5	20	96	0	89	36	12	0	51	1.40
277298--277355	28	2.0	30	93	6	102	24	25	24	25	2.00
277731--278099	184	2.0	184	100	0	738	28	11	16	44	1.82
278533--278565	15	2.1	16	88	5	50	66	0	0	33	0.92
279002--279036	17	2.1	16	89	5	52	51	2	25	20	1.61
279440--279489	17	3.1	17	68	26	54	52	22	6	20	1.68
283691--283729	3	13.0	3	100	0	78	33	0	0	66	0.92
285020--285044	11	2.3	11	100	0	50	16	12	24	48	1.79
302575--302630	10	5.6	10	77	12	53	16	26	26	30	1.96
302596--302640	19	2.3	20	88	11	67	15	28	31	24	1.96
302647--302695	22	2.2	22	96	0	89	20	48	20	10	1.78
309827--309861	9	3.8	9	85	7	52	20	25	25	28	1.99
309828--309870	19	2.3	19	92	8	70	16	30	27	25	1.97
309866--309920	19	2.9	19	81	5	67	21	50	21	5	1.68
309874--309920	14	3.3	15	85	5	62	21	53	21	4	1.63
309874--309920	24	2.0	24	91	0	76	21	53	21	4	1.63
309874--309920	5	9.8	5	81	9	62	21	53	21	4	1.63
317123--317197	10	7.8	9	74	12	51	17	25	28	29	1.97
317123--317161	21	1.9	21	89	5	62	17	25	23	33	1.96
317144--317203	10	6.3	10	76	19	58	15	28	30	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317144--317203	19	3.2	19	79	13	70	15	28	30	26	1.96
317200--317254	5	11.0	5	81	14	69	20	54	21	3	1.59
317203--317253	9	5.2	9	82	17	66	19	54	21	3	1.60
317212--317265	27	2.0	26	92	3	90	20	51	20	7	1.70
319990--320018	2	14.5	2	100	0	58	51	0	0	48	1.00
325279--325941	328	2.0	328	99	0	1299	26	26	17	29	1.98
326839--326872	18	2.0	17	88	11	52	32	17	23	26	1.97
327116--327177	27	2.3	27	85	0	79	46	24	4	24	1.71
327860--327952	39	2.4	39	88	0	141	21	20	22	35	1.96
327860--327981	39	3.1	39	84	2	111	21	20	22	35	1.96
330880--330957	12	6.5	12	73	5	59	17	16	14	51	1.77
330883--330952	24	2.9	24	78	0	86	18	17	15	48	1.81
330900--330973	36	2.1	36	81	0	85	17	14	16	51	1.77
330874--330957	24	3.5	23	75	10	80	19	16	13	51	1.77
340036--340079	19	2.4	19	84	3	54	15	9	0	75	1.05
343555--343579	11	2.3	11	100	0	50	68	16	0	16	1.22
349291--349329	21	1.9	20	89	5	60	35	23	15	25	1.94
366816--366908	40	2.3	40	79	1	107	32	16	24	26	1.96
368017--368093	27	2.9	26	80	5	91	23	7	20	48	1.76
368941--368997	25	2.3	25	81	6	71	54	7	10	28	1.60
368951--369005	25	2.2	25	93	3	94	52	12	9	25	1.68
368957--369017	25	2.4	25	89	5	88	52	11	11	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370646--370699	22	2.5	22	100	0	108	24	18	14	42	1.88
373333--373402	35	2.0	35	97	0	131	41	17	7	34	1.76
376426--376531	30	3.5	30	78	3	97	44	10	7	37	1.67
386371--386395	2	12.5	2	100	0	50	52	0	0	48	1.00
386933--386970	17	2.2	18	90	4	60	63	5	5	26	1.37
389368--389416	24	2.0	24	88	0	71	53	18	10	18	1.72
390520--390553	18	1.9	18	88	5	52	29	20	0	50	1.49
391843--391875	15	2.2	15	94	0	57	24	24	33	18	1.97
391855--391914	18	3.3	18	83	9	77	15	21	45	18	1.86
394542--394575	15	2.1	16	89	10	52	23	29	35	11	1.90
396322--396380	31	1.9	31	86	6	84	37	22	18	22	1.94
396533--396570	16	2.4	16	90	0	58	50	23	2	23	1.62
402827--402881	22	2.5	22	97	2	103	27	21	18	32	1.96
404852--404895	21	2.1	21	82	0	52	9	43	15	31	1.79
405477--405501	13	1.9	13	100	0	50	40	0	16	44	1.47
406077--406210	46	2.9	46	88	1	198	27	26	21	24	1.99
407572--407700	59	2.2	59	90	2	206	46	18	4	30	1.69
407606--407700	29	3.2	29	64	19	79	45	20	5	29	1.73
407722--407746	13	1.9	13	100	0	50	16	24	40	20	1.91
408611--408676	21	3.2	20	87	12	89	22	19	9	48	1.77
412362--412405	23	1.9	23	81	9	54	29	4	0	65	1.12
418086--418147	21	2.9	21	95	2	106	37	4	12	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418476--418518	20	2.2	20	91	0	68	18	4	20	55	1.60
423023--423061	20	2.0	20	100	0	78	30	7	41	20	1.80
425284--425366	3	27.7	3	84	7	98	31	2	0	66	1.05
426760--426814	2	27.5	2	100	0	110	50	0	0	49	1.00
430587--430620	17	2.1	16	88	5	50	76	0	8	14	1.01
445760--445832	30	2.4	30	79	4	85	42	9	19	28	1.82
446550--446581	11	2.9	11	100	0	64	56	0	15	28	1.40
446611--446671	30	2.0	30	84	6	79	37	11	19	31	1.87
448607--448783	51	3.8	45	82	9	194	31	21	7	39	1.81
453863--453954	41	2.2	41	84	3	114	23	20	21	33	1.97

Tables:   1   2   3   4   5   6