genome.fa.s7418.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007418.1 Hibiscus syriacus cultivar Beakdansim tig00020063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1198774

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 645 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689135--689489	45	7.9	45	77	5	294	24	15	18	41	1.89
689123--689489	179	2.1	179	82	6	449	24	14	18	42	1.87
689135--689489	90	4.0	89	77	4	333	24	15	18	41	1.89
689220--689479	135	1.9	134	83	3	335	25	15	19	40	1.91
689443--689556	50	2.3	51	83	7	135	28	21	14	35	1.92
690186--690749	134	4.2	134	83	2	625	30	19	18	31	1.96
694102--694422	54	5.8	53	72	13	161	31	10	16	42	1.81
694110--694361	54	4.6	56	76	11	191	30	11	16	41	1.83
694158--694362	56	3.7	55	78	8	184	30	11	16	41	1.83
694413--695208	240	3.3	239	85	3	1012	30	17	16	35	1.92
694950--695381	198	2.2	198	84	1	562	30	16	16	36	1.91
699120--699217	43	2.2	44	83	5	119	47	2	5	44	1.36
699667--699719	27	2.0	27	88	0	79	35	26	11	26	1.90
706540--706577	16	2.4	16	90	0	58	26	10	42	21	1.85
706547--706578	16	2.0	16	100	0	64	25	12	43	18	1.85
708453--708485	16	2.0	17	88	5	50	75	0	3	21	0.93
708950--708981	6	5.5	6	92	7	57	53	12	0	34	1.39
708950--708985	12	3.3	11	88	11	56	52	11	0	36	1.37
711713--711788	1	76.0	1	76	0	62	13	0	0	86	0.56
711714--711927	5	42.8	5	68	22	96	15	2	4	77	1.04
711719--711931	9	23.0	9	74	14	143	15	2	4	77	1.04
711719--711927	43	4.7	43	74	9	156	15	2	4	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712543--712642	3	31.0	3	80	13	110	61	3	1	35	1.18
712544--712642	10	9.8	10	80	15	82	61	3	1	34	1.18
712543--712642	13	7.8	12	80	12	110	61	3	1	35	1.18
712543--712642	16	6.2	15	83	11	110	61	3	1	35	1.18
714240--714307	5	13.6	5	77	16	61	5	16	0	77	0.95
714230--714307	15	5.4	14	75	15	61	6	15	0	78	0.95
714224--714307	42	2.0	43	84	13	111	7	15	0	77	0.97
714413--714497	41	2.0	42	88	2	127	30	12	40	16	1.86
714511--714559	12	4.0	12	81	2	53	22	48	16	12	1.79
714605--714661	17	3.1	17	70	18	51	49	0	0	50	1.00
715338--715371	13	2.6	13	85	0	50	26	17	23	32	1.97
715348--715643	85	3.5	86	86	5	331	30	19	16	33	1.94
715381--715643	85	3.1	85	88	4	363	30	20	16	32	1.94
717720--717795	25	3.0	25	66	11	64	1	38	9	51	1.42
721630--721668	15	2.5	15	91	4	60	7	20	7	64	1.45
727812--727842	3	10.3	3	100	0	62	32	0	0	67	0.91
729466--729506	2	20.5	2	100	0	82	48	0	0	51	1.00
733558--733589	2	16.0	2	93	0	55	50	3	0	46	1.17
736644--736684	18	2.3	18	100	0	82	24	26	26	21	2.00
738839--738877	3	13.0	3	100	0	78	33	0	0	66	0.92
747259--747285	14	1.9	14	100	0	54	14	3	0	81	0.82
755049--755215	85	2.0	85	83	7	214	33	17	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755192--755237	13	3.5	13	84	0	65	34	21	15	28	1.94
761593--761648	24	2.3	25	81	12	71	76	0	1	21	0.87
761694--761734	18	2.3	18	95	0	73	70	4	4	19	1.24
762356--762538	76	2.5	71	83	6	206	55	13	1	29	1.48
762356--762562	76	2.8	77	78	11	202	56	12	2	29	1.49
769774--769846	15	4.9	15	79	3	94	41	5	20	32	1.75
769774--769846	30	2.5	30	95	2	130	41	5	20	32	1.75
769942--770040	49	2.0	50	80	9	114	47	2	0	50	1.12
770175--770246	29	2.5	30	80	15	96	51	1	0	47	1.09
770175--770278	29	3.6	27	75	19	88	51	1	0	46	1.12
770291--770334	22	2.0	23	86	4	63	54	0	0	45	0.99
770526--770645	42	2.9	42	92	0	195	47	19	15	17	1.83
772041--772068	12	2.3	12	100	0	56	50	7	0	42	1.30
776676--776720	22	2.0	22	83	8	56	28	20	20	31	1.97
777065--777137	30	2.4	30	80	13	87	42	9	16	31	1.80
783135--783192	30	1.9	30	86	6	82	41	8	18	31	1.81
783131--783203	30	2.4	30	76	13	78	41	9	19	30	1.83
784159--784225	30	2.2	30	84	10	84	37	8	19	34	1.83
784159--784225	31	2.2	29	86	5	89	37	8	19	34	1.83
785348--785445	45	2.2	46	87	5	137	43	6	18	31	1.74
785833--785887	12	4.8	12	82	6	69	27	3	25	43	1.71
785834--785891	23	2.5	23	94	0	98	29	3	25	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
785834--785892	11	5.2	11	81	6	64	30	3	25	40	1.72
786197--786253	22	2.6	22	91	0	96	36	14	21	28	1.92
786343--786500	46	3.4	45	88	3	226	43	15	19	21	1.87
786418--786489	20	3.3	20	68	20	63	38	13	26	20	1.90
786343--786520	46	3.9	46	85	2	225	44	14	20	20	1.86
795425--795503	40	2.0	40	85	5	106	37	5	17	39	1.72
796779--796906	60	2.1	60	85	2	168	39	20	10	29	1.87
798527--798619	31	2.8	34	71	17	95	34	24	21	19	1.96
798493--798619	66	1.9	66	88	0	191	35	24	21	18	1.96
798492--798613	31	3.8	31	69	14	86	36	22	21	18	1.95
798685--798728	12	3.7	12	100	0	88	68	15	6	9	1.38
805434--805506	22	3.2	22	63	32	55	36	23	4	35	1.74
805399--805615	46	4.8	46	86	5	282	32	23	5	38	1.79
805697--805777	40	2.0	40	85	0	108	25	23	23	27	2.00
817364--817534	65	2.6	66	86	3	238	37	22	19	20	1.94
826582--826707	47	2.8	45	85	5	164	29	23	7	38	1.83
830482--830554	22	3.3	22	80	3	74	17	34	26	21	1.96
832405--832445	21	1.9	21	85	14	57	14	2	24	58	1.49
832710--832750	10	4.3	10	84	12	50	39	0	17	43	1.49
832715--832750	18	2.0	18	94	0	63	36	0	16	47	1.47
832715--832752	10	4.0	10	83	13	53	36	0	18	44	1.50
833900--834037	65	2.1	66	84	1	179	37	21	17	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836331--836360	13	2.3	13	94	0	51	36	0	0	63	0.95
836320--836360	16	2.6	16	88	0	55	39	0	0	60	0.96
836329--836372	10	4.5	10	86	11	56	36	2	0	61	1.09
840941--840986	14	3.4	13	82	17	58	82	6	8	2	0.91
841604--841680	22	3.5	22	94	0	136	38	27	11	22	1.88
842490--843567	106	10.2	106	91	1	1687	34	25	17	22	1.96
843714--844316	124	4.8	124	73	12	379	32	24	18	24	1.97
844092--844322	125	1.8	125	90	1	374	31	25	19	24	1.98
844880--844909	13	2.3	13	94	0	51	36	0	0	63	0.95
844869--844909	16	2.6	16	88	0	55	39	0	0	60	0.96
844878--844921	10	4.5	10	86	11	56	36	2	0	61	1.09
849047--849152	13	8.8	12	67	21	53	56	2	0	39	1.20
849046--849168	28	4.5	27	73	13	83	54	3	1	40	1.26
849060--849126	5	13.6	5	71	20	52	55	1	1	41	1.18
849044--849165	62	2.0	63	82	12	146	54	4	1	40	1.29
849046--849152	24	4.5	23	73	18	85	56	2	0	40	1.20
869938--870009	24	3.0	24	77	0	72	22	12	26	38	1.89
882575--882634	21	2.7	22	75	19	63	10	20	3	66	1.35
882690--882760	24	3.0	24	87	0	97	19	12	29	38	1.89
887820--887866	19	2.5	19	85	0	58	27	12	19	40	1.88
892288--892319	12	2.7	12	95	0	55	28	28	15	28	1.96
895582--895667	19	4.5	19	89	5	122	27	30	25	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
895580--895667	9	9.3	9	78	8	86	27	29	27	15	1.96
902811--902855	7	6.4	7	94	0	81	26	26	28	17	1.98
902862--902930	9	7.3	9	74	8	57	24	30	30	14	1.95
902867--902920	19	2.8	19	97	0	99	24	31	29	14	1.95
908940--909113	5	34.8	5	66	24	68	58	3	1	36	1.25
908944--909044	13	8.2	13	74	23	60	62	2	0	33	1.17
908940--909068	3	44.7	3	71	21	98	62	3	0	34	1.17
908940--909068	34	3.5	36	84	11	156	62	3	0	34	1.17
908883--909068	34	5.4	34	76	16	154	58	2	2	36	1.24
908890--909109	31	7.9	28	68	22	117	56	2	3	37	1.30

Tables:   1   2   3   4   5   6