genome.fa.s7418.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007418.1 Hibiscus syriacus cultivar Beakdansim tig00020063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1198774

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 645 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103288--1103337	25	2.1	23	82	10	57	48	10	4	38	1.56
1103263--1103489	36	6.3	36	75	12	180	42	10	5	41	1.62
1104436--1104472	14	2.5	14	91	8	56	16	10	18	54	1.71
1104716--1104754	19	2.1	19	85	9	53	66	5	2	25	1.25
1106183--1106234	22	2.3	22	81	15	54	73	1	1	23	1.04
1106261--1106304	22	2.0	22	95	0	79	34	4	6	54	1.47
1106233--1106652	35	11.7	35	80	8	409	43	8	3	44	1.53
1106305--1106652	72	4.9	70	81	7	355	43	8	3	43	1.53
1107553--1107581	10	2.9	10	100	0	58	10	10	6	72	1.28
1109198--1109276	40	2.0	40	89	0	122	37	6	16	39	1.74
1112916--1113010	22	4.5	22	75	17	85	26	24	13	35	1.93
1112936--1113028	42	2.2	41	88	1	132	25	24	12	36	1.91
1114164--1114328	44	3.5	47	82	11	194	32	21	8	37	1.84
1114151--1114326	51	3.7	49	80	12	181	32	22	7	36	1.83
1114151--1114326	99	1.8	93	85	7	244	32	22	7	36	1.83
1114433--1114514	40	2.0	40	97	0	155	32	26	18	21	1.97
1114801--1114838	17	2.4	17	86	8	53	42	13	10	34	1.78
1121212--1121387	99	1.8	93	85	7	244	31	22	7	38	1.83
1121212--1121389	44	3.8	45	82	10	205	30	22	7	38	1.83
1121494--1121615	40	3.0	40	98	0	235	33	27	16	22	1.95
1138929--1139211	81	3.5	81	82	2	327	31	19	10	38	1.86
1139627--1139717	42	2.2	41	82	2	101	26	19	13	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1143295--1143377	24	3.5	24	80	6	96	21	14	18	45	1.84
1146077--1146157	40	2.0	40	88	4	119	29	27	7	35	1.84
1148630--1149015	192	2.0	193	98	1	756	44	9	10	34	1.73
1153620--1153668	24	2.0	24	92	0	80	34	14	12	38	1.83
1154708--1154761	22	2.5	22	75	0	54	25	25	9	38	1.86
1168140--1168231	45	2.0	45	95	0	166	21	17	17	43	1.88
1168189--1168531	49	7.0	49	79	3	341	30	18	14	36	1.91
1168213--1168531	98	3.2	97	82	4	381	31	19	13	35	1.91
1169258--1169299	14	3.0	14	89	0	66	33	26	16	23	1.96
1169260--1169316	14	4.2	14	82	6	64	28	21	21	29	1.98
1169389--1169422	17	1.9	18	88	5	52	50	5	2	41	1.42
1172018--1172490	44	10.8	44	83	2	371	21	24	21	32	1.98
1172294--1172504	43	4.9	43	88	4	282	23	23	20	32	1.98
1172248--1172511	86	3.0	85	84	6	309	21	23	20	33	1.97
1175264--1175298	18	1.9	18	88	0	52	51	0	14	34	1.42
1176958--1177343	44	8.8	44	84	0	389	22	24	20	32	1.98
1176945--1177386	44	10.1	43	80	3	242	22	24	19	33	1.97
1192753--1192795	20	2.2	20	82	0	50	34	16	18	30	1.93
1194295--1194336	22	2.0	22	86	9	61	28	30	2	38	1.70
1195241--1195288	19	2.5	19	100	0	96	18	20	29	31	1.97
1195195--1195353	84	1.9	83	86	1	228	26	18	23	32	1.97
1195256--1195418	65	2.5	65	81	5	179	25	18	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1196511--1196554	21	2.1	21	82	0	52	31	15	43	9	1.79

Tables:   1   2   3   4   5   6

The End!