genome.fa.s7490.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007490.1 Hibiscus syriacus cultivar Beakdansim tig00020682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  795028

Tables:   1   2   3   4   

This is table  4  of  4  ( 475 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605546--605609	30	2.2	28	83	5	74	42	0	0	57	0.98
605720--605756	19	1.9	19	88	0	56	32	0	2	64	1.07
607392--607432	21	2.0	21	100	0	82	19	34	19	26	1.96
607392--607461	21	3.3	21	80	7	79	18	31	22	27	1.97
611235--611700	190	2.4	189	84	3	585	33	16	16	33	1.92
612474--612500	14	1.9	14	100	0	54	22	22	7	48	1.75
614610--614660	5	10.2	5	77	8	50	70	0	7	21	1.12
614576--614647	30	2.4	30	78	19	78	68	2	6	22	1.27
614612--614648	20	1.9	20	94	5	67	70	0	5	24	1.08
614768--614803	2	18.5	2	88	5	56	55	0	0	44	0.99
615589--615673	37	2.3	37	85	0	107	31	10	15	42	1.81
616435--617743	106	12.3	106	91	0	1963	22	18	24	34	1.96
619319--619368	16	3.6	14	82	17	68	0	14	6	80	0.90
623743--623798	27	2.1	27	80	12	62	75	1	7	16	1.11
623778--623898	20	6.2	19	70	20	72	63	0	2	33	1.13
623823--623876	2	27.5	2	84	3	56	57	0	1	40	1.09
624046--624087	2	21.5	2	95	4	77	52	0	0	47	1.00
624045--624187	12	13.9	10	72	17	57	59	1	4	34	1.25
624152--624184	2	16.5	2	93	0	57	51	0	3	45	1.16
624625--624726	37	2.8	37	87	0	132	31	13	14	40	1.85
630502--630560	21	2.8	21	73	14	59	45	20	33	0	1.51
630544--630610	21	3.2	21	84	0	71	41	17	35	4	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631077--631314	43	5.3	42	73	14	147	35	24	15	23	1.95
631163--631262	51	2.0	51	86	7	141	35	27	15	23	1.94
633233--633468	7	32.4	7	69	21	105	39	2	6	51	1.39
633233--633444	2	111.5	2	66	27	81	41	2	6	50	1.41
633264--633492	5	44.6	5	69	22	97	39	2	4	53	1.33
633264--633425	62	2.7	60	82	10	181	40	2	5	51	1.39
633240--633477	39	6.2	39	68	25	95	39	2	5	52	1.38
633370--633435	27	2.5	26	82	4	71	43	1	3	51	1.26
633395--633481	36	2.6	32	75	19	86	37	2	2	57	1.24
633271--633446	97	1.8	96	81	14	218	42	2	4	50	1.37
633445--633493	26	2.0	25	88	8	73	30	0	2	67	1.02
635650--635697	16	3.1	16	96	3	89	50	18	0	31	1.48
636243--636296	22	2.5	21	85	11	65	25	20	33	20	1.97
636354--636410	23	2.5	23	97	0	105	26	31	12	29	1.92
639793--639868	14	5.4	14	79	1	80	27	17	28	26	1.97
639792--639868	28	2.7	29	86	6	113	27	16	29	25	1.97
647793--647888	3	32.0	3	71	12	63	60	1	0	38	1.04
648113--648211	39	2.5	39	91	0	153	21	20	9	49	1.76
648147--648483	139	2.4	138	81	7	355	28	20	12	39	1.88
648526--648976	113	4.0	113	91	2	680	27	20	15	36	1.93
660186--660276	3	30.3	3	77	4	85	56	1	0	42	1.06
660186--660284	9	11.3	9	81	10	107	57	1	0	41	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662756--663118	45	8.1	45	92	0	600	29	19	10	39	1.86
663527--663568	20	2.1	20	86	0	57	30	28	11	28	1.92
663589--663789	96	2.1	95	78	8	203	28	20	15	34	1.94
669765--670101	45	7.5	45	93	1	523	30	20	10	38	1.85
670621--670661	22	1.9	21	85	5	55	24	29	12	34	1.91
670700--670749	20	2.5	20	96	0	91	28	24	18	30	1.97
672905--672973	27	2.5	27	85	4	84	18	11	21	47	1.80
672915--672973	27	2.1	28	93	3	102	16	8	25	49	1.74
673940--673968	12	2.4	12	100	0	58	17	34	0	48	1.47
675306--675337	15	2.1	16	94	5	57	53	18	0	28	1.45
682743--682781	20	2.0	20	84	0	51	33	30	0	35	1.58
683756--683814	3	19.7	3	100	0	118	33	0	0	66	0.92
684625--684671	25	2.0	24	91	8	78	29	12	14	42	1.83
686960--687049	45	2.0	47	82	4	112	34	10	17	37	1.84
694170--694205	18	2.0	18	88	0	54	25	22	27	25	2.00
701856--701917	27	2.3	27	91	0	97	27	14	16	41	1.87
703620--703797	90	2.0	90	96	0	329	44	6	11	37	1.65
705265--705299	18	1.9	18	88	0	52	28	25	20	25	1.99
712376--712415	21	1.9	21	89	0	62	27	0	35	37	1.57
716997--717036	21	1.9	21	85	10	55	35	10	2	52	1.48
724588--725331	58	12.7	58	92	1	1148	36	13	18	32	1.89
724600--725338	408	1.8	405	93	1	1140	36	12	18	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725549--725683	68	2.0	68	94	0	234	30	14	23	31	1.94
727625--727685	26	2.3	26	97	0	113	52	3	18	26	1.60
728175--728243	23	3.0	23	71	0	75	20	23	23	33	1.97
729084--729325	81	3.0	80	83	4	274	40	10	21	28	1.86
741641--741694	24	2.2	24	90	0	81	25	40	1	31	1.66
746795--746848	24	2.2	24	100	0	108	29	37	3	29	1.75
748063--748149	30	2.9	30	96	0	156	37	17	9	35	1.81
753045--753108	30	2.1	30	91	5	103	21	25	14	39	1.91
755048--755112	30	2.1	31	85	2	87	35	13	26	24	1.93
755099--755197	29	3.3	29	70	18	94	32	7	26	34	1.83
755129--755227	31	3.2	31	70	18	107	38	8	25	28	1.84
755105--755227	61	2.0	61	100	0	246	34	8	26	31	1.85
764241--764270	15	2.0	15	93	0	51	60	10	20	10	1.57
767011--767065	21	2.5	21	82	11	67	23	10	0	65	1.24
767025--767074	21	2.6	19	79	17	50	22	10	0	68	1.19
779692--780335	139	4.6	139	91	0	1024	22	20	23	33	1.97
779692--780341	277	2.3	278	91	0	1054	22	20	23	33	1.98
780478--780578	23	4.7	23	67	20	65	43	0	18	36	1.57
780494--780572	40	2.0	41	82	7	99	37	1	20	40	1.60
780790--780862	34	2.1	34	89	0	110	36	4	8	50	1.51
781371--781418	21	2.3	22	78	10	55	22	29	27	20	1.99
782980--783046	28	2.3	30	77	15	77	56	2	1	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786264--786347	26	3.3	26	80	6	118	52	9	0	38	1.34
786267--786375	51	2.2	51	98	1	211	51	12	0	35	1.40
786266--786372	26	4.2	26	78	7	110	53	11	0	35	1.37
786777--786826	21	2.4	21	80	6	66	22	26	18	34	1.96
786816--786867	21	2.5	21	87	3	70	38	17	23	21	1.93
786853--787030	40	4.4	41	82	4	155	31	24	19	24	1.98
786856--787010	20	7.7	20	85	1	157	29	25	19	25	1.99
786857--787010	40	3.8	40	86	3	175	28	25	19	25	1.99
787740--787793	24	2.2	24	90	0	81	22	16	20	40	1.91
787968--787992	12	2.1	12	100	0	50	72	0	28	0	0.86
788522--788614	20	4.7	20	70	13	75	36	23	18	21	1.95
788606--788660	14	3.6	14	73	21	56	45	20	23	10	1.82
788588--788714	33	3.8	33	94	0	218	46	18	22	11	1.82
788568--788718	19	8.7	19	66	22	82	45	19	23	11	1.84
788724--788822	19	5.7	19	71	22	92	11	23	20	45	1.82
788748--788804	14	3.7	14	75	20	60	8	24	22	43	1.81
788729--788822	33	2.8	33	96	0	170	11	23	20	44	1.84
788929--788965	14	2.6	14	91	0	65	45	21	0	32	1.52
790073--790097	12	2.1	12	100	0	50	16	24	24	36	1.94
790327--790393	21	3.2	21	68	4	55	19	20	35	23	1.95
790843--790899	19	2.9	19	81	5	69	47	21	19	12	1.81
790867--790905	19	2.1	19	90	0	60	48	25	17	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790998--791373	94	4.1	94	92	2	593	47	18	12	22	1.81
793046--793138	20	5.1	19	71	18	72	45	19	22	12	1.84
793723--793810	20	4.4	20	75	5	81	20	18	19	42	1.90
794759--794813	3	18.3	3	100	0	110	0	34	0	65	0.93
794974--795028	3	18.7	3	96	3	103	0	34	0	65	0.93

Tables:   1   2   3   4

The End!