genome.fa.s7659.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007659.1 Hibiscus syriacus cultivar Beakdansim tig00025513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47187

Tables:   1   2   3   

This is table  2  of  3  ( 241 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21835--21864	13	2.3	13	100	0	60	13	23	46	16	1.82
21841--21917	18	4.6	18	78	15	101	11	19	49	19	1.78
21835--21913	31	2.5	31	89	0	131	13	20	46	18	1.83
21821--21894	13	5.2	13	74	19	51	17	20	43	18	1.88
23937--24010	35	2.1	34	87	2	103	32	28	29	9	1.88
24050--24139	23	3.8	23	82	4	99	38	18	14	27	1.90
26647--26675	15	1.9	15	100	0	58	27	20	34	17	1.95
26643--26689	8	6.5	8	75	20	50	21	23	38	17	1.93
26671--26746	18	4.6	17	76	17	88	11	19	48	19	1.79
26665--26742	31	2.5	31	87	2	122	14	20	46	19	1.84
26665--26694	13	2.3	13	100	0	60	13	23	46	16	1.82
26689--26724	13	2.8	13	86	0	54	13	19	47	19	1.83
27524--29096	87	18.2	87	90	1	2409	37	17	12	32	1.87
27655--27694	19	2.1	19	90	0	62	37	17	12	32	1.87
27742--27781	19	2.1	19	90	0	62	37	17	12	32	1.87
27829--27868	19	2.1	19	90	0	62	37	17	12	32	1.87
27916--27955	19	2.1	19	85	0	53	35	17	12	35	1.88
27524--44039	261	64.4	261	85	5	21287	37	17	11	33	1.86
28009--28045	19	1.9	19	88	0	56	37	16	18	27	1.92
28090--28129	19	2.1	19	85	0	53	35	17	12	35	1.88
28177--28216	19	2.1	19	85	0	53	35	17	12	35	1.88
28351--28390	19	2.1	19	90	0	62	37	17	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28694--28733	19	2.1	19	85	0	53	35	17	15	32	1.91
28869--28910	19	2.2	19	83	8	50	45	9	11	33	1.73
28955--28994	19	2.1	19	85	0	53	40	17	10	32	1.83
29097--29389	87	3.4	87	88	2	419	39	17	10	32	1.85
29195--29234	19	2.1	19	90	0	62	37	17	12	32	1.87
28944--29249	153	2.0	153	89	6	469	38	17	10	33	1.84
29214--29535	155	2.1	155	92	2	531	37	17	12	32	1.87
29302--29448	68	2.2	68	96	0	267	38	17	12	31	1.87
29369--29665	87	3.4	87	92	2	499	37	17	12	32	1.88
29611--29650	19	2.1	19	90	0	62	37	17	12	32	1.87
29666--29905	87	2.8	87	90	1	356	40	17	10	31	1.84
29513--29818	153	2.0	153	90	1	479	41	16	10	31	1.82
29764--29803	19	2.1	19	90	0	62	37	17	12	32	1.87
29753--30058	153	2.0	153	91	3	501	38	17	11	32	1.86
29906--30198	87	3.4	87	89	2	428	39	17	11	31	1.85
30004--30043	19	2.1	19	90	0	62	37	17	12	32	1.87
30111--30257	68	2.2	68	96	0	267	38	17	12	31	1.87
30178--31514	87	15.4	87	87	2	1897	37	17	12	32	1.87
30023--30340	155	2.1	155	90	3	498	37	18	12	31	1.88
30683--30721	19	2.0	20	85	5	53	33	15	12	38	1.85
30943--30982	19	2.1	19	90	0	62	37	17	12	32	1.87
31286--31325	19	2.1	19	85	0	53	35	17	12	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31373--31412	19	2.1	19	85	0	53	40	17	10	32	1.83
31449--31580	66	2.0	66	88	2	194	41	16	9	31	1.81
31515--32276	87	8.8	87	87	3	1072	37	17	11	32	1.86
31613--31652	19	2.1	19	90	0	62	37	17	12	32	1.87
31362--31667	153	2.0	153	89	5	476	39	17	11	31	1.84
32048--32087	19	2.1	19	85	0	53	35	17	12	35	1.88
32138--32174	19	1.9	19	88	0	56	40	16	13	29	1.86
32211--32339	66	2.0	66	87	3	188	42	17	10	30	1.81
32124--32429	153	2.0	153	88	6	460	39	17	11	30	1.86
32277--34514	87	25.8	87	88	2	3243	38	17	11	32	1.86
32375--32414	19	2.1	19	90	0	62	37	17	12	32	1.87
32809--32848	19	2.1	19	85	0	53	35	17	12	35	1.88
32983--33022	19	2.1	19	90	0	62	37	17	12	32	1.87
33332--33368	19	1.9	19	88	0	56	40	13	13	32	1.84
33496--33544	19	2.5	19	83	9	64	46	16	10	26	1.78
33592--33631	19	2.1	19	90	0	62	37	15	12	35	1.85
33679--33718	19	2.1	19	85	0	53	35	17	12	35	1.88
33853--33892	19	2.1	19	85	0	53	35	17	12	35	1.88
33943--33982	19	2.1	19	90	0	62	42	15	17	25	1.88
34027--34066	19	2.1	19	85	0	53	35	17	12	35	1.88
34200--34239	19	2.1	19	90	0	62	37	17	12	32	1.87
34515--35071	87	6.4	87	87	3	721	36	17	11	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34362--34809	153	2.8	153	81	9	431	37	16	11	34	1.86
34515--42724	174	47.7	174	77	8	5316	37	17	11	33	1.86
34960--34998	19	2.0	20	85	5	53	38	15	15	30	1.88
34978--35139	69	2.3	69	84	0	207	35	18	11	34	1.87
34906--35218	156	2.0	153	87	4	450	36	19	11	32	1.87
35062--38161	87	35.7	87	87	2	4232	37	17	11	33	1.86
35374--35413	19	2.1	19	85	0	53	37	12	12	37	1.81
35637--35676	19	2.1	19	90	0	62	37	17	12	32	1.87
35898--35935	19	2.0	19	89	0	58	39	13	13	34	1.83
36332--36371	19	2.1	19	90	0	62	37	17	12	32	1.87
36419--36458	19	2.1	19	90	0	62	37	17	12	32	1.87
36593--36632	19	2.1	19	90	0	62	37	17	12	32	1.87
37465--37504	19	2.1	19	90	0	62	37	17	12	32	1.87
37977--38015	19	2.1	19	85	0	51	35	15	12	35	1.86
38083--38237	67	2.3	67	83	4	188	36	17	12	33	1.88
38217--38256	19	2.1	19	90	0	62	37	17	12	32	1.87
37995--38323	153	2.1	156	85	2	450	36	17	11	33	1.87
38305--38342	18	2.1	18	90	5	58	39	13	13	34	1.83
38476--38515	19	2.1	19	85	0	53	37	17	10	35	1.83
38150--40735	87	29.9	87	86	3	3464	38	17	11	33	1.85
38652--38689	19	2.0	19	89	0	58	39	15	13	31	1.86
38913--38950	19	2.0	19	89	0	58	39	15	13	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38998--39037	19	2.1	19	90	0	62	37	17	12	32	1.87
39173--39212	19	2.1	19	90	0	62	37	17	12	32	1.87
40039--40078	19	2.1	19	85	0	53	35	17	12	35	1.88
40550--40588	19	2.1	19	85	0	51	35	15	12	35	1.86
40656--40812	68	2.3	68	83	2	190	36	17	12	33	1.88
40792--40831	19	2.1	19	85	0	53	35	17	12	35	1.88
40724--42724	87	23.0	87	85	2	2538	37	16	11	34	1.86
40568--40899	155	2.1	157	85	1	454	36	18	11	33	1.87
41052--41091	19	2.1	19	85	0	53	37	17	10	35	1.83
40724--42724	173	11.5	174	85	2	2556	37	16	11	34	1.86
41312--41351	19	2.1	19	90	0	62	37	17	10	35	1.83
41660--41699	19	2.1	19	90	0	62	37	17	12	32	1.87
42012--42051	19	2.1	19	90	0	62	37	17	12	32	1.87
42446--42482	19	1.9	19	88	0	56	40	10	10	37	1.75
42640--42792	68	2.2	68	91	0	243	37	18	13	31	1.89
42550--42870	155	2.1	152	86	4	448	37	16	13	32	1.87
42704--44039	87	15.5	87	86	4	1787	37	17	11	34	1.86
43376--43414	20	2.0	19	85	5	51	38	15	12	33	1.85
43810--43847	19	2.0	19	89	0	58	39	15	13	31	1.86
44041--45384	87	15.5	86	85	4	1706	34	11	17	36	1.86
44041--47187	174	18.4	172	80	7	3131	34	11	16	36	1.86
44041--47187	261	12.2	261	84	5	3815	34	11	16	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44754--44793	19	2.1	19	86	9	55	32	15	17	35	1.91
45218--45538	155	2.1	152	86	4	448	32	13	16	37	1.87
45296--45448	68	2.2	68	91	0	243	31	13	18	37	1.89
45364--47187	87	21.2	87	84	4	2204	34	11	16	37	1.86
46038--46077	19	2.1	19	90	0	62	32	12	17	37	1.87
45364--47187	519	3.5	518	83	5	2188	34	11	16	37	1.86
46383--46422	19	2.1	19	90	0	62	32	12	17	37	1.87
46470--46508	19	2.1	19	90	0	60	35	12	15	35	1.86
46731--46770	19	2.1	19	90	0	62	35	10	17	37	1.83
46818--46856	19	2.0	20	85	5	53	30	15	15	38	1.88

Tables:   1   2   3