genome.fa.s7704.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007704.1 Hibiscus syriacus cultivar Beakdansim tig00109919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  612835

Tables:   1   2   3   

This is table  2  of  3  ( 259 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291720--292274	83	6.7	83	93	1	821	28	12	22	36	1.91
294785--294838	21	2.5	22	90	6	92	33	14	14	37	1.88
295301--296372	111	9.8	112	84	6	1204	36	14	19	29	1.91
295301--296372	336	3.3	337	87	6	1436	36	14	19	29	1.91
296604--296669	3	22.3	3	89	3	98	34	1	0	63	1.04
297887--297949	12	5.1	12	72	14	56	42	0	1	55	1.09
297890--297961	12	5.8	12	72	8	54	41	0	1	56	1.07
300127--300644	258	2.0	258	99	0	1020	27	23	16	32	1.96
322887--322940	17	3.2	17	77	12	58	46	1	0	51	1.11
329509--329541	17	1.9	17	100	0	66	60	6	6	27	1.44
331554--331642	30	3.0	29	75	15	83	24	11	2	61	1.40
331613--331642	14	2.1	14	93	0	51	33	10	0	56	1.32
331755--331805	12	4.5	11	72	18	50	31	3	0	64	1.11
331755--331800	22	2.1	21	88	11	67	32	4	0	63	1.14
333257--333648	195	2.0	195	100	0	784	28	12	11	47	1.76
334184--334241	30	1.9	30	92	0	98	41	17	25	15	1.89
334448--334495	14	3.6	14	75	11	55	18	10	6	64	1.45
334799--334853	28	2.0	28	100	0	110	34	14	18	32	1.91
336851--336984	72	1.9	72	91	0	223	24	20	18	35	1.95
339749--339802	27	2.0	27	100	0	108	40	11	22	25	1.87
340054--340120	35	1.9	35	85	11	93	31	10	23	34	1.89
341634--341709	22	3.5	22	80	7	73	35	14	11	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342056--342506	113	3.9	113	85	4	525	39	16	18	25	1.91
346643--346683	12	3.2	13	82	10	57	65	0	0	34	0.93
354274--354315	18	2.4	17	88	4	57	59	2	4	33	1.31
361327--361380	22	2.5	22	96	0	99	44	9	7	38	1.65
363404--363433	15	1.9	16	93	6	53	56	0	0	43	0.99
363994--364056	25	2.5	25	85	10	76	68	3	6	22	1.27
364017--364071	4	13.2	4	81	14	67	69	1	5	23	1.19
364019--364071	21	2.5	21	88	8	81	69	1	5	22	1.19
364100--364151	2	26.0	2	88	0	77	44	0	0	55	0.99
364100--364157	14	4.1	14	97	0	107	43	1	0	55	1.10
364107--364168	28	2.2	28	85	5	81	46	1	1	50	1.20
364342--364366	12	2.1	12	100	0	50	44	0	0	56	0.99
365596--365630	3	11.7	3	100	0	70	68	31	0	0	0.90
365629--365715	3	29.0	3	97	0	165	65	0	0	34	0.93
367525--367593	30	2.3	30	87	5	95	24	21	18	34	1.96
367915--367964	24	2.1	23	88	3	73	52	4	8	36	1.50
373365--373424	27	2.3	26	85	8	77	65	8	6	20	1.43
373404--373441	4	9.2	4	88	5	58	71	0	2	26	1.00
373480--373536	18	3.2	18	74	0	51	56	3	3	36	1.34
373700--373747	2	23.5	2	95	4	87	50	2	0	47	1.12
379151--379314	67	2.4	67	97	0	310	26	14	15	43	1.84
381129--381182	25	2.2	25	90	6	83	31	9	3	55	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381112--382067	333	2.9	334	90	3	1443	28	13	8	49	1.72
386754--386799	23	2.0	23	95	0	83	34	13	15	36	1.86
402965--403082	59	2.0	59	100	0	236	28	5	38	27	1.78
406784--406833	20	2.5	20	96	0	91	28	22	16	34	1.95
407491--407556	34	1.9	34	87	6	98	15	13	22	48	1.80
409041--409188	42	3.5	42	85	0	179	26	37	14	21	1.92
409284--409334	21	2.4	21	83	6	59	25	9	29	35	1.88
409702--409770	21	3.4	20	82	4	68	24	37	17	20	1.93
411571--411606	18	2.0	18	94	0	63	16	2	25	55	1.55
413870--413923	24	2.2	24	93	0	90	40	20	18	20	1.91
414868--414925	20	2.8	20	85	12	66	36	13	25	24	1.92
415712--415763	19	2.7	19	69	3	50	55	0	3	40	1.18
421587--421655	23	3.0	23	80	0	84	31	23	24	20	1.98
421664--422084	103	4.2	103	94	3	736	37	25	12	24	1.91
421664--422084	204	2.1	197	93	4	718	37	25	12	24	1.91
422673--422728	21	2.7	21	97	0	103	28	21	26	23	1.99
428704--428758	23	2.4	23	84	0	74	30	27	25	16	1.96
428802--429079	95	2.8	98	89	8	435	37	25	12	24	1.90
435452--435493	21	2.0	21	95	0	75	26	28	21	23	1.99
435709--435767	30	2.0	30	93	3	102	42	15	6	35	1.73
444411--444528	31	3.6	33	76	10	93	48	2	3	45	1.32
444442--444566	31	4.0	31	77	4	101	47	4	2	46	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444442--444528	21	4.1	21	67	11	70	49	2	2	45	1.27
455157--455466	148	2.1	146	85	6	418	50	13	11	24	1.75
455738--455779	22	2.0	22	86	13	63	64	23	0	11	1.27
455738--455789	22	2.5	20	82	14	61	63	21	3	11	1.43
462813--462873	25	2.5	24	81	5	70	55	3	0	40	1.16
462835--462892	11	5.5	11	73	17	52	60	1	0	37	1.07
463016--463068	7	7.7	7	78	4	63	43	37	0	18	1.51
463019--463071	27	1.9	28	88	3	81	45	33	0	20	1.52
463801--463839	20	2.0	20	90	10	62	43	10	5	41	1.61
464560--464616	29	2.0	29	96	0	105	15	35	29	19	1.93
464634--464658	12	2.1	12	100	0	50	40	8	36	16	1.77
464687--464742	29	1.9	29	100	0	112	10	39	30	19	1.86
464758--464830	33	2.2	33	87	0	101	10	38	26	24	1.88
465453--465516	22	2.8	23	76	6	69	32	12	17	37	1.87
470131--470172	20	2.1	20	90	0	66	11	23	38	26	1.90
470502--470535	12	2.8	12	95	0	59	47	2	8	41	1.50
477383--477445	21	2.9	21	83	4	63	20	38	25	15	1.92
477427--477466	21	1.9	21	89	0	62	25	40	25	10	1.86
482389--482439	23	2.3	23	89	3	77	29	19	37	13	1.90
486293--486508	117	1.8	116	78	9	242	30	13	8	46	1.74
487783--487827	23	2.0	23	86	0	63	15	24	40	20	1.91
489922--489946	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500795--500949	83	1.9	83	97	0	292	32	18	21	26	1.97
501823--501866	23	1.9	23	90	0	70	56	20	2	20	1.52
502130--502197	21	3.2	21	80	12	86	13	42	5	38	1.68
503161--503194	17	1.9	18	94	5	61	73	0	0	26	0.83
507070--507128	27	2.2	26	82	5	73	38	5	5	50	1.46
517841--517892	2	26.0	2	100	0	104	50	0	0	50	1.00
517866--517970	49	2.1	49	94	3	183	42	15	3	38	1.65
528158--528228	36	2.0	36	91	0	115	45	19	2	32	1.65
530693--530730	2	20.0	2	84	10	53	50	0	2	47	1.15
530703--530737	18	1.9	18	88	0	52	48	5	2	42	1.41
531706--531770	31	2.1	31	97	0	121	21	30	15	32	1.94
532826--532900	21	3.7	19	79	10	87	20	20	25	34	1.96
532990--533014	6	4.2	6	100	0	50	36	48	16	0	1.46
533588--533904	21	15.2	21	91	3	453	33	21	24	20	1.97
534627--534659	16	1.9	17	88	11	50	36	0	3	60	1.12
534622--534661	17	2.3	19	79	16	50	32	0	2	65	1.06
536995--537046	22	2.6	20	76	14	54	44	7	1	46	1.43
538137--538170	2	17.0	2	93	0	59	47	0	52	0	1.00
540771--540840	36	1.9	36	97	0	131	27	10	15	47	1.77
543572--543760	95	2.0	96	85	7	260	24	13	17	43	1.85
547399--547432	5	6.6	5	86	6	50	67	0	0	32	0.91
554189--554222	17	2.0	17	100	0	68	58	11	23	5	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556571--556640	3	23.3	3	85	0	59	24	34	8	32	1.86
556570--556636	27	2.5	27	97	0	125	23	34	10	31	1.89
556991--557034	21	2.1	21	100	0	88	9	11	43	36	1.72
558607--558640	17	1.9	18	88	5	52	64	5	0	29	1.17
559423--560272	180	4.7	182	86	4	1071	41	14	15	28	1.86
559423--560272	361	2.4	363	85	5	1150	41	14	15	28	1.86
560752--560845	39	2.3	39	85	9	116	50	4	13	31	1.61
561281--561609	177	1.9	177	85	1	462	40	13	13	32	1.83
561447--561958	200	2.6	197	83	5	613	39	13	15	31	1.86
567852--567903	20	2.5	20	87	6	68	84	0	13	1	0.70

Tables:   1   2   3