Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007704.1 Hibiscus syriacus cultivar Beakdansim tig00109919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  612835

Tables:   1   2   3   

This is table  3  of  3  ( 259 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
567854--567892
14
2.8
14
96
0
69
87
0
10
2
0.65
569602--569686
38
2.3
38
87
4
120
29
14
14
42
1.84
570125--570277
44
3.5
44
82
0
171
30
20
14
34
1.93
570125--570320
44
4.5
44
78
5
155
29
21
15
33
1.94
570117--570301
88
2.1
88
81
2
210
28
23
12
35
1.92
571283--571375
39
2.3
41
78
12
104
52
2
3
41
1.29
576999--577065
33
2.0
33
97
0
125
26
16
28
28
1.97
581152--581203
25
2.1
25
88
0
77
44
15
5
34
1.70
584212--584270
23
2.7
23
85
15
81
22
22
27
28
1.99
585868--585915
13
3.7
13
91
0
78
27
20
18
33
1.96
585896--586060
85
2.0
84
87
1
240
29
21
18
30
1.97
588727--588775
24
2.0
24
100
0
98
20
26
24
28
1.99
593004--593041
18
2.1
18
95
0
67
26
18
23
31
1.97
596720--596764
21
2.1
21
91
0
72
13
31
20
35
1.91
601310--601372
18
3.6
18
75
12
67
34
7
7
49
1.61
601499--601580
41
2.0
41
97
0
155
23
17
18
41
1.90
604712--604757
21
2.2
21
88
0
65
21
10
36
30
1.88
604777--604835
21
2.8
21
78
0
73
23
20
28
27
1.99
612382--612447
35
1.9
35
96
3
125
21
21
22
34
1.96

Tables:   1   2   3

The End!