genome.fa.s7713.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007713.1 Hibiscus syriacus cultivar Beakdansim tig00109937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  584604

Tables:   1   2   3   

This is table  2  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227555--227584	2	15.0	2	100	0	60	50	0	0	50	1.00
228597--228638	22	1.9	22	85	0	57	52	7	0	40	1.29
229672--229714	19	2.2	20	88	12	63	44	2	4	48	1.36
234962--235255	55	5.3	55	87	1	394	29	19	20	30	1.97
235625--235817	95	2.0	97	84	2	255	25	24	16	33	1.96
243298--243360	24	2.5	25	80	12	76	53	0	0	46	1.00
243316--243355	19	2.1	19	90	0	62	52	0	0	47	1.00
243378--243422	12	3.8	12	94	2	74	31	48	11	8	1.69
264639--264671	2	16.5	2	100	0	66	48	0	0	51	1.00
266280--266349	26	2.7	26	95	0	122	45	5	10	38	1.61
278436--278473	13	2.8	14	84	4	51	47	21	2	28	1.64
278746--278816	27	2.6	26	79	18	74	32	1	21	45	1.61
278779--278837	14	4.2	14	80	6	66	32	1	20	45	1.61
282580--282619	21	1.9	21	84	0	53	50	17	0	32	1.47
282588--282620	14	2.3	15	85	15	52	48	18	0	33	1.48
283114--283142	10	2.9	10	100	0	58	20	31	0	48	1.50
283191--283229	18	2.2	18	90	4	62	30	0	2	66	1.05
284906--284943	18	2.1	18	90	0	58	26	31	18	23	1.97
285526--285610	35	2.5	33	78	14	91	25	8	10	55	1.62
291165--291208	19	2.3	20	92	7	74	13	4	4	77	1.08
291093--291305	118	1.9	112	84	11	285	36	6	6	51	1.52
291723--291884	65	2.5	64	83	6	184	31	22	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297697--297776	24	3.5	24	69	20	73	23	25	21	30	1.99
300419--300580	65	2.5	65	85	6	204	30	22	17	28	1.97
303112--303150	19	2.1	19	95	0	69	33	46	10	10	1.72
307365--307389	4	6.2	4	100	0	50	76	0	0	24	0.80
310218--310259	21	2.0	21	100	0	84	42	9	28	19	1.82
321301--321352	23	2.5	21	84	12	63	23	28	28	19	1.98
326744--326802	30	2.0	30	86	6	84	57	8	1	32	1.39
331014--331105	21	4.5	21	75	6	91	39	18	25	17	1.92
331014--331105	40	2.3	41	96	3	177	39	18	25	17	1.92
331033--331166	41	3.3	41	81	7	123	38	20	21	19	1.94
331094--331187	20	4.7	20	78	3	82	34	24	18	23	1.96
339589--339659	32	2.2	33	87	9	103	52	2	1	43	1.24
339589--339659	33	2.2	32	85	9	92	52	2	1	43	1.24
343057--343193	73	1.9	73	87	3	204	46	8	3	41	1.51
361535--361559	4	6.2	4	100	0	50	52	0	24	24	1.48
361745--361790	14	3.3	14	81	0	56	50	17	0	32	1.47
363368--363397	11	2.6	11	94	5	51	90	0	10	0	0.47
366084--366218	53	2.5	52	82	10	157	49	2	0	47	1.19
366212--366259	23	2.1	23	88	0	69	56	0	2	41	1.11
366992--367069	21	3.9	19	80	11	93	16	26	35	20	1.94
368459--368519	22	2.8	21	75	7	59	31	11	4	52	1.58
368511--368558	19	2.5	20	82	3	62	29	12	6	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370390--370465	32	2.5	31	80	4	91	28	31	25	14	1.95
370390--370453	31	2.0	32	84	3	85	26	31	28	14	1.95
371348--371390	22	2.0	22	100	0	86	9	23	48	18	1.76
371387--371515	19	6.7	19	81	10	129	29	27	26	16	1.97
371393--371515	10	12.7	10	79	10	132	30	28	25	16	1.96
371412--371515	29	3.6	28	85	10	95	29	27	25	16	1.97
377724--377799	31	2.5	31	82	4	100	28	31	26	13	1.93
377677--377799	62	2.0	63	80	7	144	26	29	27	16	1.97
378688--378745	5	10.8	5	75	14	53	6	24	51	17	1.69
378681--378745	22	3.0	22	97	0	121	9	24	49	16	1.75
378767--378841	29	2.5	31	89	8	120	29	26	26	17	1.97
378742--378840	9	10.3	9	73	10	72	30	26	27	16	1.96
378803--378841	21	1.9	21	94	5	71	33	25	25	15	1.95
379596--379651	19	2.8	21	91	5	89	16	26	37	19	1.92
379942--379981	20	2.0	20	90	0	62	60	0	0	40	0.97
380129--380168	21	1.9	21	84	0	53	42	5	5	47	1.47
380716--380767	25	2.1	25	82	7	61	50	11	13	25	1.75
383003--383035	16	2.0	17	88	5	50	21	12	21	45	1.84
383299--383348	22	2.3	23	80	19	63	56	0	2	42	1.11
383294--383347	23	2.2	25	84	12	69	57	0	1	40	1.09
384434--384485	24	2.2	24	89	3	79	63	5	1	28	1.28
387501--387538	20	1.9	20	84	10	51	63	7	10	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391084--391167	40	2.2	38	82	8	107	38	23	14	23	1.92
394514--394566	14	3.8	14	94	0	97	30	16	20	32	1.95
394507--394567	28	2.2	28	96	0	113	29	19	19	31	1.97
403709--403746	16	2.2	18	90	9	62	39	18	5	36	1.73
407252--407286	3	11.7	3	100	0	70	0	31	0	68	0.90
407516--407721	87	2.4	85	80	7	218	24	18	7	49	1.73
407586--407776	43	4.5	42	76	11	129	24	18	6	50	1.70
407425--407785	42	8.3	44	71	14	211	24	18	7	50	1.72
408692--408743	20	2.6	20	96	0	95	38	26	13	21	1.90
408733--408831	21	4.8	20	72	6	72	36	23	19	21	1.95
408798--408991	20	9.6	20	81	5	221	35	25	19	19	1.95
408798--408991	60	3.2	60	83	0	253	35	25	19	19	1.95
409371--409441	33	2.2	33	92	0	115	11	22	18	47	1.80
409562--409632	33	2.2	33	89	0	106	43	25	22	8	1.81
409628--409725	19	5.7	19	70	22	81	10	24	22	42	1.84
409650--409739	14	5.7	14	74	23	81	8	25	23	42	1.83
409633--409747	33	3.5	33	95	0	212	9	24	20	45	1.81
411445--411826	185	2.1	186	98	0	748	22	12	18	46	1.83
411445--411824	93	4.1	93	98	0	744	22	12	18	46	1.83
411868--411996	19	7.3	19	75	17	125	45	28	17	8	1.77
411904--411996	33	2.8	32	91	4	150	46	27	18	7	1.76
411868--411996	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411992--412126	19	7.6	19	76	16	137	10	19	24	45	1.81
412014--412070	14	3.7	14	77	20	60	8	21	24	45	1.80
411997--412089	33	2.8	33	98	0	177	9	20	22	47	1.79
413943--414015	38	1.9	38	97	0	137	28	1	16	53	1.51
413939--414002	19	3.4	19	64	10	51	25	1	15	57	1.47
413997--414032	14	2.6	14	95	0	63	33	0	22	44	1.53
414139--414240	19	5.6	19	84	13	151	44	17	23	14	1.86
414247--414565	33	9.1	36	82	14	320	14	21	16	46	1.83
414269--414593	19	18.4	19	80	15	396	14	20	17	47	1.83
414247--414565	52	6.0	52	93	4	541	14	21	16	46	1.83
416898--416922	12	2.1	12	100	0	50	0	28	0	72	0.86
417097--417143	24	2.0	24	87	8	69	38	21	14	25	1.92
417817--418265	20	22.5	20	86	3	573	20	19	26	33	1.97
423181--423232	27	1.9	27	84	0	68	50	5	1	42	1.37
426086--426127	18	2.3	19	80	12	52	66	4	4	23	1.30
427991--428031	3	13.7	3	85	10	57	29	31	2	36	1.71
429435--429643	65	3.2	62	77	12	208	28	17	23	30	1.97
430091--430139	2	24.5	2	100	0	98	51	0	0	48	1.00
430723--430766	21	2.1	21	82	0	52	36	15	38	9	1.80
438080--438144	29	2.2	29	100	0	130	23	24	27	24	2.00
438199--438323	46	2.7	46	90	6	184	32	17	20	29	1.96
438336--438391	20	2.8	20	100	0	112	19	16	33	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438784--438824	16	2.6	16	88	0	64	51	17	17	14	1.77
439032--439078	21	2.2	21	96	0	85	36	10	10	42	1.74
439919--439976	18	3.2	17	80	11	62	68	0	3	27	1.05
443367--443424	3	19.3	3	100	0	116	32	0	0	67	0.91
446187--446225	21	1.9	21	84	5	53	41	5	7	46	1.55
446172--446240	33	2.1	32	86	7	95	43	5	5	44	1.52
446286--446369	35	2.3	36	84	12	100	42	5	5	45	1.53
446346--446449	41	2.6	39	79	7	104	39	8	5	46	1.59
447428--447558	68	1.9	68	96	0	244	28	16	21	34	1.94
452985--453098	29	3.9	29	98	0	219	11	37	30	20	1.88

Tables:   1   2   3