genome.fa.s7713.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007713.1 Hibiscus syriacus cultivar Beakdansim tig00109937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  584604

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453102--453176	33	2.3	33	86	4	98	10	38	24	26	1.88
453207--453246	14	2.9	14	92	0	62	12	30	35	22	1.91
453291--453348	29	2.0	29	89	0	89	22	27	36	13	1.92
458284--458320	17	2.1	18	95	5	67	29	0	2	67	1.04
461237--461267	14	2.2	14	94	0	53	22	3	29	45	1.68
461336--461360	3	8.3	3	100	0	50	68	0	0	32	0.90
461687--461716	15	2.0	15	100	0	60	46	6	13	33	1.69
462240--462267	14	2.0	14	100	0	56	50	14	14	21	1.78
466835--466861	3	9.0	3	100	0	54	33	0	0	66	0.92
468836--468933	33	3.0	33	83	3	108	21	17	32	28	1.96
468869--468937	33	2.1	33	91	0	111	23	20	31	24	1.98
469705--469746	18	2.3	18	87	0	57	33	16	23	26	1.96
469868--470646	216	3.7	212	87	7	1049	23	11	26	38	1.89
470604--470690	38	2.3	38	90	9	135	13	11	36	37	1.81
471621--471691	33	2.2	33	100	0	142	32	25	8	33	1.86
472544--472750	43	4.8	44	80	8	210	19	17	25	37	1.94
473121--473173	21	2.5	21	78	9	54	3	35	16	43	1.67
473155--473224	21	3.3	21	81	0	77	2	34	21	41	1.68
478951--479002	21	2.4	23	81	9	65	63	0	1	34	1.06
480136--480199	30	2.1	30	100	0	128	12	15	35	35	1.85
482211--482288	41	1.9	41	86	5	113	30	21	24	23	1.99
482514--482700	82	2.3	82	83	2	214	32	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482583--482732	41	3.6	41	74	15	155	31	22	16	29	1.96
482387--482730	83	4.2	81	74	8	282	31	21	16	30	1.95
485940--486008	23	3.0	22	81	10	75	50	1	0	47	1.09
485942--486024	23	3.5	22	78	17	69	50	1	1	46	1.16
488673--488747	23	3.3	23	87	7	102	28	16	25	30	1.96
491669--491715	17	2.8	17	90	6	69	23	4	0	72	1.02
496867--496925	27	2.2	27	82	14	70	44	1	6	47	1.39
497215--497248	18	2.0	18	88	11	54	55	0	0	44	0.99
503735--503915	59	3.2	58	74	9	185	34	15	13	37	1.86
505055--505082	14	2.0	14	100	0	56	35	14	14	35	1.86
508489--508663	95	1.8	95	92	0	296	30	26	10	31	1.91
512256--512440	79	2.3	79	81	6	214	38	8	16	35	1.80
512471--512542	26	2.8	26	79	6	76	36	9	13	40	1.78
512362--512571	95	2.3	91	91	4	332	34	9	15	41	1.78
514713--514778	29	2.3	29	84	7	82	33	4	1	60	1.26
514713--514793	28	2.9	28	81	9	76	30	6	1	61	1.28
514854--514921	23	2.8	24	80	10	68	57	1	4	36	1.28
517724--517791	26	2.5	28	81	11	70	45	0	5	48	1.26
522838--522918	29	2.8	28	78	16	92	59	4	14	20	1.54
522876--522915	21	1.9	21	84	0	53	62	5	12	20	1.48
523989--524075	27	3.1	27	68	12	86	10	9	14	65	1.46
523995--524083	29	3.1	28	67	19	76	11	8	14	65	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523985--524105	56	2.2	56	98	0	233	11	8	18	61	1.53
523998--524088	27	3.3	27	70	11	85	12	7	15	64	1.47
524016--524104	29	3.1	29	68	12	85	11	7	20	60	1.55
530235--530297	30	2.1	30	100	0	126	23	19	9	47	1.78
536687--536727	18	2.3	18	91	4	66	29	4	2	63	1.28
538410--538449	18	2.2	18	95	0	71	22	32	20	25	1.98
541016--541060	22	2.0	22	86	0	63	57	0	0	42	0.98
541100--541145	14	3.3	14	82	11	51	60	2	0	36	1.09
544721--545223	202	2.5	200	87	4	696	34	21	13	29	1.92
565303--565329	13	2.1	13	100	0	54	25	22	14	37	1.93
566292--566319	13	2.2	13	100	0	56	92	0	7	0	0.37
571330--571362	17	1.9	17	93	0	57	57	0	9	33	1.30
572612--572659	3	16.3	3	86	4	71	60	4	0	35	1.16
580094--580188	32	2.9	33	77	11	81	42	27	12	17	1.86
583527--583603	37	2.1	36	82	2	91	50	7	6	35	1.57
584247--584286	21	1.9	21	89	0	62	30	0	2	67	1.04

Tables:   1   2   3

The End!