genome.fa.s7717.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007717.1 Hibiscus syriacus cultivar Beakdansim tig00109948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  900945

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 486 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229907--229946	6	6.7	6	97	0	71	52	2	45	0	1.14
230712--231333	284	2.2	281	82	7	734	31	14	7	47	1.71
231824--231889	34	1.9	34	84	6	89	51	0	1	46	1.10
239071--239565	246	2.0	248	99	0	976	24	12	24	38	1.91
240552--240692	72	2.0	72	85	5	196	43	7	4	43	1.52
240638--240716	38	2.1	38	88	4	115	53	0	2	44	1.14
244878--245230	154	2.3	155	81	4	440	28	16	7	47	1.73
244878--245265	158	2.5	155	78	6	424	29	17	7	46	1.74
250136--250218	35	2.4	35	85	4	105	43	31	12	13	1.80
251052--251138	31	2.7	32	80	7	79	43	0	3	52	1.18
251086--251166	31	2.7	30	79	7	83	41	0	3	54	1.18
251087--251172	15	5.8	14	72	9	55	39	0	3	56	1.16
251038--251170	43	3.1	42	79	14	146	41	0	4	54	1.21
251166--251210	20	2.2	20	84	11	56	15	8	0	75	1.03
252209--252257	20	2.4	20	79	3	53	16	6	4	73	1.19
258544--258933	195	2.0	195	97	2	748	34	17	23	25	1.96
264533--264585	7	7.3	7	82	6	61	39	0	1	58	1.09
264532--264582	22	2.5	20	81	12	66	41	0	1	56	1.10
264559--264597	14	2.8	14	88	0	51	28	2	0	69	1.02
266348--266442	46	2.0	47	95	4	174	38	18	16	25	1.92
279436--279656	117	1.9	117	81	3	266	28	14	9	47	1.75
281023--281076	20	2.7	20	97	0	99	16	20	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280979--281141	85	1.9	84	82	9	206	25	18	23	33	1.97
281759--281801	18	2.4	18	96	0	77	34	9	20	34	1.85
285281--285388	40	2.7	40	100	0	216	56	5	4	33	1.43
285710--285769	32	1.9	31	83	10	77	38	11	8	41	1.72
286143--286185	22	2.0	22	81	4	52	37	9	6	46	1.63
287824--287873	7	6.7	7	86	13	73	14	58	16	12	1.64
287833--287867	17	2.1	17	100	0	70	11	60	17	11	1.59
287826--287873	24	2.0	24	100	0	96	12	58	16	12	1.63
289070--289137	4	16.2	4	73	14	57	20	4	2	72	1.16
289082--289135	25	2.2	25	86	6	74	20	3	3	72	1.16
289070--289138	29	2.3	29	83	11	79	20	4	2	72	1.15
289082--289161	33	2.4	33	82	17	96	17	6	3	72	1.20
289416--289453	16	2.4	16	95	0	67	42	10	26	21	1.85
298361--298390	11	2.6	11	94	5	51	80	0	20	0	0.72
298428--298500	1	73.0	1	72	0	56	86	0	13	0	0.58
298431--298500	6	11.7	6	85	14	92	85	0	14	0	0.59
298431--298500	16	4.2	16	83	9	88	85	0	14	0	0.59
298428--298500	22	3.4	22	88	1	112	86	0	13	0	0.58
299241--299363	65	1.9	65	91	0	201	36	21	14	26	1.93
300112--300167	14	4.0	14	95	0	103	26	30	7	35	1.83
301239--301282	22	2.0	21	82	4	52	36	0	0	63	0.95
301381--301411	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301456--301501	19	2.5	18	86	10	58	21	8	0	69	1.15
301538--301582	17	2.6	17	80	13	56	28	2	0	68	1.01
301541--301602	13	5.0	12	73	21	56	25	1	3	69	1.13
302888--302990	30	3.4	30	79	0	89	37	12	7	41	1.72
315919--316209	32	9.1	31	78	5	147	34	15	11	38	1.84
316000--316210	96	2.2	96	83	5	266	33	16	12	37	1.86
316000--316210	64	3.3	63	82	5	246	33	16	12	37	1.86
317253--317284	14	2.3	14	94	0	55	53	6	0	40	1.26
328753--328841	29	3.0	29	76	11	81	37	15	4	42	1.68
337665--337746	37	2.3	37	78	16	91	36	10	19	32	1.87
337564--337746	70	2.6	68	77	8	188	43	10	19	27	1.83
337682--337797	58	2.0	58	91	1	189	36	12	18	32	1.88
337739--337943	73	2.8	73	82	5	227	39	12	22	26	1.89
338017--338123	38	3.0	35	72	17	94	39	8	18	33	1.81
338017--338155	74	1.9	74	85	5	192	39	8	20	31	1.83
341716--341742	13	2.1	13	100	0	54	70	7	7	14	1.32
354122--354159	18	2.1	19	90	5	60	13	18	47	21	1.82
361509--361561	24	2.2	24	86	0	79	26	15	24	33	1.95
368099--368372	54	5.1	54	83	1	316	34	18	17	29	1.94
373277--373328	13	4.0	13	82	0	68	26	21	17	34	1.95
384082--384136	18	3.0	18	86	7	67	7	12	1	78	1.04
384111--384164	24	2.3	24	81	12	67	5	16	1	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384092--384130	8	4.5	8	84	15	51	5	10	0	84	0.76
398545--398582	18	2.1	18	95	0	67	50	5	23	21	1.69
399790--399855	29	2.2	30	94	2	116	34	30	18	16	1.93
399887--399974	32	2.8	32	72	14	83	36	14	19	29	1.92
400841--400918	20	3.7	20	89	6	102	25	23	20	30	1.98
400906--401066	64	2.5	62	75	12	146	26	24	17	32	1.97
405120--405177	20	2.7	20	81	10	62	25	20	22	31	1.98
405229--405268	19	2.1	19	90	0	62	25	25	15	35	1.94
410090--410131	17	2.5	17	88	0	57	66	7	7	19	1.39
410440--410517	31	2.5	31	89	4	113	42	3	19	34	1.69
418265--418295	16	2.0	16	93	6	55	74	6	12	6	1.21
419825--420160	168	2.0	168	100	0	672	38	11	12	37	1.80
423145--423195	18	2.8	18	74	11	50	23	33	5	37	1.79
424535--424633	11	8.5	11	78	13	74	29	4	4	62	1.32
424579--424632	11	4.7	12	95	2	76	27	3	3	64	1.27
424603--424634	3	11.3	3	87	12	50	31	0	0	68	0.90
424603--424634	8	3.8	9	84	16	50	31	0	0	68	0.90
432575--432604	9	3.4	9	90	9	53	23	13	0	63	1.29
436138--436171	12	2.8	13	86	13	54	76	0	14	8	1.01
436192--436216	2	12.5	2	100	0	50	52	0	0	48	1.00
436550--436608	21	2.9	19	78	14	64	28	8	5	57	1.50
437706--438380	114	6.1	114	85	8	848	37	14	19	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438175--438361	98	1.9	99	87	4	277	40	13	19	26	1.89
438583--438615	10	3.4	10	95	4	59	39	0	0	60	0.97
438583--438615	13	2.5	14	85	14	52	39	0	0	60	0.97
438583--438628	20	2.3	20	85	7	58	43	0	0	56	0.99
439622--439748	66	1.9	65	81	10	152	37	11	6	44	1.66
440021--440076	29	2.0	28	82	10	69	37	1	0	60	1.07
440885--440914	2	15.0	2	92	0	51	50	3	0	46	1.18
441029--441092	9	6.9	9	75	18	51	18	1	3	76	1.00
441033--441098	13	5.4	13	72	16	61	15	1	4	78	0.98
441030--441098	25	2.9	23	81	14	79	15	1	4	78	0.98
442567--442591	12	2.1	12	100	0	50	40	0	0	60	0.97
445600--445646	24	1.9	25	86	4	69	23	2	2	72	1.06
447809--447889	28	2.9	28	90	0	126	37	27	19	16	1.93
451950--451979	15	2.0	15	93	0	51	23	30	0	46	1.52
452201--452281	28	2.9	28	88	0	117	39	23	17	19	1.92
452429--452469	21	2.0	21	85	9	57	21	21	2	53	1.57
452490--452537	25	1.9	24	84	16	62	39	12	2	45	1.54
454838--454959	22	5.5	21	63	12	55	32	10	22	33	1.89
454826--454996	45	3.8	45	89	0	261	33	9	23	33	1.88
454826--454937	22	5.0	23	65	12	79	32	9	25	33	1.88
454826--454995	90	1.9	90	93	0	295	33	9	23	33	1.87
455588--455628	21	2.0	21	95	0	73	17	26	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455734--455805	36	2.0	37	89	8	112	30	19	25	25	1.98
456018--456075	21	3.0	19	83	14	82	50	8	10	31	1.67
456018--456075	18	3.1	18	85	11	80	50	8	10	31	1.67
463161--463206	22	2.0	22	83	8	56	52	0	6	41	1.27
463234--463262	14	2.0	15	93	6	51	55	6	0	37	1.27
464202--464274	37	2.0	36	84	7	94	47	4	2	45	1.36
464400--464455	15	3.5	15	77	18	60	25	33	7	33	1.83
464431--464468	20	2.0	19	90	10	60	23	26	10	39	1.87
464741--464773	16	2.1	16	94	0	57	24	9	48	18	1.76
464939--464995	17	3.1	17	70	18	51	50	0	0	49	1.00

Tables:   1   2   3   4   5