genome.fa.s7727.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007727.1 Hibiscus syriacus cultivar Beakdansim tig00109978_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  640948

Tables:   1   2   3   4   

This is table  1  of  4  ( 475 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875--957	21	3.8	21	74	16	62	16	24	37	21	1.94
897--958	22	2.8	22	82	9	72	19	24	35	20	1.96
7061--7876	113	7.2	112	87	6	971	35	16	19	28	1.93
7061--7863	336	2.4	334	85	7	1070	35	15	19	28	1.93
8210--8271	3	22.0	3	84	12	78	32	0	1	66	1.02
8200--8267	22	3.0	22	87	6	84	27	0	2	69	1.03
8206--8269	19	3.3	20	82	6	80	31	0	1	67	1.00
8207--8271	22	3.0	22	84	8	89	32	0	1	66	1.01
9563--9616	14	3.4	16	76	19	58	29	3	0	66	1.09
9563--9608	9	4.7	10	76	13	51	30	4	0	65	1.12
12908--13081	92	1.9	93	89	6	271	41	3	10	44	1.55
12889--13108	22	9.7	22	73	13	126	42	4	10	42	1.58
12918--13086	49	3.8	45	75	14	170	42	3	10	43	1.56
13163--13215	19	2.6	21	77	20	58	52	1	1	43	1.23
13186--13248	26	2.3	27	86	5	83	47	0	3	49	1.17
15436--15468	12	2.8	12	95	0	57	15	12	9	63	1.51
17644--17712	13	5.5	13	72	6	70	49	0	17	33	1.47
17639--17723	25	3.4	25	98	1	161	45	0	15	38	1.46
23951--23984	12	2.8	12	90	0	50	55	29	0	14	1.40
26417--26452	18	2.0	18	94	0	63	55	25	2	16	1.55
26857--26894	20	1.9	20	94	0	67	15	26	21	36	1.93
26940--26989	25	2.0	25	92	0	82	26	10	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27357--27411	24	2.3	25	81	9	69	34	5	12	47	1.65
27376--27412	18	2.1	18	89	0	56	32	5	10	51	1.60
27368--27420	24	2.2	24	86	0	70	37	3	11	47	1.58
27722--27808	39	2.2	39	95	0	156	45	20	16	17	1.85
27989--28026	20	1.9	20	94	0	67	44	23	13	18	1.85
28035--28162	20	6.8	20	69	13	92	21	19	20	39	1.93
28092--28141	18	2.7	18	81	6	55	20	14	20	46	1.84
29433--29528	21	4.6	21	71	12	72	19	20	36	22	1.95
29453--29545	21	4.4	21	74	8	64	23	20	33	22	1.97
30051--30090	21	1.9	21	94	0	71	32	30	15	22	1.94
30116--30154	19	2.1	19	90	0	60	23	38	12	25	1.90
30051--30215	64	2.5	65	83	4	199	33	26	15	25	1.95
30226--30261	18	2.1	17	89	5	54	27	27	16	27	1.97
42056--42141	43	2.0	43	97	0	163	39	24	18	17	1.92
43453--43495	20	2.1	21	87	8	63	18	13	0	67	1.23
43452--43501	20	2.5	20	75	15	59	18	18	0	64	1.30
47998--48077	24	3.5	22	78	14	92	22	26	23	27	2.00
50557--50596	21	1.9	21	94	0	71	32	30	15	22	1.94
50622--50660	19	2.1	19	95	0	69	20	38	15	25	1.92
50557--50786	64	3.5	64	80	10	213	31	26	15	26	1.96
50738--50786	19	2.6	19	84	9	57	24	30	18	26	1.98
53213--53286	36	2.1	36	97	0	139	44	13	9	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53334--53373	20	2.1	19	85	4	53	12	17	22	47	1.81
53405--53436	13	2.5	13	100	0	64	78	15	6	0	0.95
53648--53695	22	2.2	22	88	0	69	22	10	41	25	1.85
53823--53871	20	2.5	20	89	0	80	20	18	20	40	1.91
53823--53882	20	3.0	20	81	13	70	18	18	23	40	1.92
53901--53944	21	2.1	21	91	0	70	38	13	25	22	1.91
56050--56080	16	1.9	16	93	0	53	45	3	0	51	1.17
56344--56400	28	2.0	28	100	0	114	40	17	10	31	1.84
60241--60268	2	14.0	2	100	0	56	50	0	0	50	1.00
60898--61346	229	2.0	227	95	0	799	45	8	7	39	1.62
61411--61455	19	2.3	19	88	3	72	53	11	17	17	1.72
63854--63918	21	3.1	21	80	6	69	40	15	29	15	1.88
63951--64016	33	2.0	33	90	0	105	28	0	48	22	1.51
65813--65861	19	2.6	19	93	0	80	30	2	10	57	1.43
65980--66950	198	4.9	198	98	0	1843	37	15	16	31	1.90
68411--68472	18	3.4	18	79	0	79	37	9	35	17	1.83
68411--68502	6	15.3	6	79	0	67	36	7	34	20	1.81
68426--68506	3	27.0	3	75	0	72	35	6	34	23	1.80
68414--68490	36	2.1	36	90	0	118	35	9	35	20	1.85
68414--68502	12	7.4	12	84	0	88	35	7	34	21	1.82
68411--68502	18	5.1	18	77	0	76	36	7	34	20	1.81
69932--70823	183	4.9	183	97	0	1649	35	14	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72491--72527	18	2.1	18	89	0	56	32	5	10	51	1.60
72483--72529	24	2.0	24	86	0	67	34	4	14	46	1.64
72786--72872	39	2.2	39	95	0	156	48	20	13	17	1.81
73277--73349	23	3.2	23	88	0	101	34	4	21	39	1.73
79467--79801	35	9.4	35	72	15	217	44	2	6	45	1.44
79454--79801	110	3.2	106	79	11	331	44	2	6	45	1.45
79454--79741	38	7.9	37	80	11	251	45	3	7	44	1.47
81099--81153	2	27.5	2	100	0	110	49	0	0	50	1.00
82547--82583	16	2.3	16	95	0	65	10	10	18	59	1.59
85145--85257	57	2.0	57	89	0	172	33	16	21	28	1.95
88572--88605	17	1.9	18	88	5	52	29	0	5	64	1.17
94711--94790	40	2.0	40	87	4	117	21	40	27	11	1.87
96911--97026	53	2.2	53	87	0	160	37	17	18	26	1.93
97042--97170	48	2.7	48	96	0	231	49	17	9	24	1.75
100732--100767	14	2.6	14	95	0	63	13	16	16	52	1.74
102892--102922	3	10.3	3	100	0	62	64	0	35	0	0.94
108340--108409	34	2.1	32	86	5	95	22	30	15	31	1.95
108807--108866	29	2.0	31	90	6	97	41	16	6	35	1.75
116924--116981	20	2.6	22	89	10	84	31	20	22	25	1.98
120984--121035	21	2.5	21	100	0	104	32	15	19	32	1.93
121150--121207	20	2.7	20	86	10	62	32	20	20	25	1.97
121170--121207	20	1.9	20	100	0	76	31	21	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131837--131880	20	2.2	20	95	0	79	11	0	31	56	1.35
132795--133018	114	2.0	114	90	0	349	32	9	14	42	1.79
133956--134065	54	2.0	54	94	0	193	25	18	15	40	1.89
134190--134225	16	2.2	16	100	0	72	38	5	30	25	1.78
134518--134548	10	3.1	10	100	0	62	0	9	58	32	1.31
134796--134864	29	2.4	29	95	2	122	43	33	8	14	1.76
134846--134915	30	2.3	31	82	9	90	37	24	8	30	1.85
134924--135015	33	2.6	36	79	15	109	40	36	11	10	1.77
139215--139271	30	2.0	30	86	13	84	33	1	5	59	1.30
139359--139385	2	13.5	2	100	0	54	51	48	0	0	1.00
143732--143774	20	2.2	20	83	8	52	58	4	2	34	1.32
144010--144063	20	2.7	19	75	8	63	33	31	18	16	1.93
144113--144327	20	10.6	20	78	10	179	37	25	18	18	1.93
144154--144326	40	4.3	40	82	6	206	37	24	19	18	1.94
144540--144592	27	1.9	27	84	3	70	39	32	7	20	1.81
144763--144838	20	3.7	21	85	5	88	50	18	19	11	1.78
144858--144970	20	6.1	19	77	13	119	12	23	19	45	1.84
148396--148431	14	2.6	14	95	0	63	33	0	22	44	1.53
148538--148646	19	6.3	17	74	20	68	45	22	17	14	1.84
148538--148636	33	3.0	32	86	2	126	47	21	18	13	1.82
148554--148611	14	3.8	14	73	20	53	48	20	17	13	1.81
148642--148707	19	3.7	19	71	19	70	12	24	19	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148646--148717	33	2.2	33	97	0	135	11	26	19	43	1.84
152155--152374	20	10.9	19	73	13	129	21	19	22	36	1.95
152161--152412	40	6.2	40	83	5	231	19	19	23	38	1.94
152161--152351	40	4.7	40	88	4	242	20	19	22	37	1.94
152178--152374	61	3.2	61	80	5	168	20	19	22	37	1.95
152360--152412	20	2.7	20	91	5	81	13	18	24	43	1.86
152441--152494	20	2.7	20	74	25	60	22	18	25	33	1.97
157976--158012	19	2.0	20	89	10	60	45	10	10	32	1.74
166713--166788	31	2.4	31	80	10	91	28	9	11	50	1.70
173406--173462	19	3.0	18	82	10	60	68	3	10	17	1.33

Tables:   1   2   3   4