genome.fa.s7727.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007727.1 Hibiscus syriacus cultivar Beakdansim tig00109978_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  640948

Tables:   1   2   3   4   

This is table  3  of  4  ( 475 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255206--255240	13	2.7	13	86	0	52	48	8	17	25	1.75
257375--257419	21	2.2	20	88	8	63	68	0	0	31	0.89
257379--257407	13	2.1	14	93	6	51	68	0	0	31	0.89
257386--257442	11	5.1	12	72	22	52	64	1	0	33	1.04
257375--257448	16	4.5	17	73	20	68	66	1	0	32	1.00
258044--258086	15	2.8	15	85	3	50	53	2	4	39	1.34
258082--258131	22	2.3	22	82	0	64	54	0	4	42	1.19
260070--260108	20	1.9	20	85	15	53	51	0	0	48	1.00
260607--260641	18	1.9	18	94	0	61	28	2	8	60	1.41
262198--262258	24	2.6	25	78	17	69	44	0	0	55	0.99
262288--262336	13	3.8	13	86	2	64	14	12	55	18	1.69
263317--263366	11	4.5	12	78	11	54	16	32	30	22	1.95
287034--287092	23	2.6	23	81	2	75	57	1	1	38	1.19
289650--289746	2	49.0	2	91	6	162	49	1	1	48	1.14
289650--289743	31	3.0	31	96	1	170	50	1	1	47	1.15
292164--292513	43	8.2	43	78	6	178	35	20	20	23	1.96
292190--292513	85	3.8	83	81	5	319	34	20	21	23	1.96
295762--296212	41	10.9	41	81	3	447	35	18	17	28	1.94
295786--296192	125	3.3	124	84	3	500	36	17	17	27	1.93
295745--296212	166	2.8	168	84	2	606	35	18	17	28	1.94
296739--296772	17	2.0	17	100	0	68	23	23	11	41	1.87
300423--300459	18	2.1	18	85	14	51	32	13	10	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302518--302839	108	3.0	106	84	5	391	39	11	12	36	1.80
302601--302849	105	2.3	105	86	4	277	39	12	12	36	1.80
303405--304041	54	11.8	54	80	5	680	40	18	14	25	1.89
303405--304049	163	4.0	161	84	4	710	40	19	14	25	1.89
303614--304069	161	2.8	160	82	5	375	41	20	13	24	1.88
304263--304449	73	2.6	73	79	7	236	32	11	13	42	1.80
304457--304551	21	4.6	21	78	5	104	31	27	21	20	1.97
304743--304803	30	2.0	30	90	9	97	32	4	13	49	1.63
309053--309091	20	2.0	20	89	0	60	25	33	28	12	1.93
311975--312059	33	2.5	34	80	5	118	49	14	0	36	1.43
312011--312106	46	2.2	45	83	9	128	50	11	1	37	1.46
312082--312125	21	2.1	21	91	0	70	56	13	0	29	1.38
313811--313850	21	1.9	21	89	0	62	52	10	10	27	1.66
315192--315263	36	2.0	36	100	0	144	22	11	16	50	1.77
326310--326335	2	13.0	2	100	0	52	50	0	0	50	1.00
331960--332027	31	2.2	31	84	5	84	54	0	7	38	1.28
332907--332958	9	6.1	9	76	13	56	32	1	1	63	1.16
332906--332955	17	3.0	17	91	2	75	34	2	4	60	1.27
332915--332960	16	2.9	16	87	6	58	30	2	2	65	1.16
334628--334688	27	2.3	27	85	0	77	16	45	18	19	1.85
348208--348278	19	3.6	19	74	18	65	73	4	2	19	1.13
348226--348277	22	2.5	20	84	9	68	73	5	1	19	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348223--348293	37	1.9	37	82	5	90	69	5	2	22	1.23
349500--349557	3	18.3	3	82	3	53	70	0	1	27	0.97
349496--349557	12	5.2	12	82	7	81	70	0	1	27	0.96
349799--349961	84	1.9	84	88	0	245	22	20	23	32	1.98
350036--350119	38	2.3	36	88	8	127	38	10	21	29	1.87
350093--350134	19	2.0	20	86	13	59	40	9	19	30	1.83
350248--350725	253	1.9	253	82	1	609	24	18	24	32	1.97
350876--351087	106	2.0	104	83	9	268	23	19	23	33	1.97
354904--354956	21	2.5	20	85	14	72	73	5	0	20	1.03
355750--355828	37	2.1	37	90	4	124	46	7	7	37	1.61
356523--356601	27	2.7	30	70	20	69	29	5	3	62	1.34
356631--356655	2	12.5	2	100	0	50	48	0	0	52	1.00
358326--358394	23	3.0	23	86	0	102	27	24	26	21	1.99
358410--358622	103	2.1	103	93	0	363	36	22	14	27	1.92
360309--360353	21	2.1	21	83	0	54	15	22	28	33	1.95
365161--365215	22	2.5	22	100	0	110	36	27	12	23	1.91
366177--367451	106	12.0	106	90	0	1904	34	24	18	22	1.96
368201--368305	37	2.8	37	85	0	138	40	15	13	31	1.85
368936--368968	2	16.5	2	100	0	66	48	0	0	51	1.00
369096--369126	2	15.5	2	100	0	62	48	0	0	51	1.00
370238--370293	3	18.3	3	88	3	85	71	0	0	28	0.86
374467--374539	36	2.0	37	81	5	87	52	4	0	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374868--374907	19	2.2	18	91	8	64	27	32	7	32	1.85
374876--374918	19	2.3	19	87	0	59	32	23	9	34	1.87
378974--379045	35	2.1	35	81	5	83	48	2	2	45	1.31
384125--384155	2	15.5	2	93	0	53	51	0	0	48	1.00
389939--389964	7	3.7	7	100	0	52	26	42	0	30	1.56
407552--407578	14	1.9	14	100	0	54	51	0	40	7	1.30
407876--407933	27	2.1	28	87	3	82	37	5	5	51	1.46
409439--409530	23	4.0	23	81	5	78	28	21	28	21	1.99
409747--409815	30	2.3	30	90	5	104	31	24	4	39	1.75
410295--410348	19	2.8	19	88	5	65	20	27	20	31	1.97
416404--416471	23	3.0	23	78	2	75	29	25	25	20	1.99
416681--416749	30	2.3	30	92	5	113	33	24	2	39	1.70
417134--417241	56	1.9	55	84	1	144	24	16	22	37	1.94
418558--418635	32	2.5	30	82	8	102	23	7	28	41	1.82
418586--418759	93	1.9	95	87	3	264	22	9	28	38	1.86
418655--418726	30	2.4	29	77	11	74	30	9	25	34	1.88
418707--418790	33	2.5	33	88	7	116	10	9	35	44	1.72
424888--424931	22	2.0	23	86	4	63	22	6	15	54	1.65
426952--427010	22	2.8	21	87	7	84	23	20	27	28	1.99
428486--428567	34	2.4	34	84	8	112	35	18	21	24	1.96
432914--432957	22	2.0	23	86	4	63	22	6	15	54	1.65
435291--435345	21	2.6	21	100	0	110	18	27	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435379--435443	22	3.1	21	80	12	80	26	18	26	29	1.98
435387--435445	22	2.8	21	87	7	84	23	20	27	28	1.99
436916--437018	23	4.7	22	81	14	117	27	19	26	27	1.99
436916--437018	44	2.4	44	84	11	133	27	19	26	27	1.99
440279--440318	21	1.9	21	85	10	55	35	10	2	52	1.48
442225--442299	20	3.8	20	78	18	84	22	18	30	28	1.97
442225--442299	18	3.8	19	76	15	80	22	18	30	28	1.97
444095--444123	14	2.0	15	93	6	51	13	13	13	58	1.63
447144--447188	17	2.6	18	79	10	58	51	2	0	46	1.13
447779--447824	23	2.0	23	91	0	74	39	8	19	32	1.82
448169--448384	115	1.9	115	89	3	337	35	18	12	34	1.87
447979--448588	313	2.0	309	93	1	1031	32	16	13	37	1.88
448288--448839	198	2.8	197	81	5	605	32	14	14	39	1.86
451564--452568	199	5.1	199	87	2	1516	27	14	15	42	1.86
451564--452568	398	2.5	398	96	0	1866	27	14	15	42	1.86
455172--455213	15	2.8	15	88	0	66	26	2	52	19	1.58
455567--456640	199	5.5	198	84	7	1437	27	14	15	42	1.86
455861--456621	377	2.0	375	95	0	1351	26	14	15	42	1.86
456057--456417	178	2.0	178	94	1	625	26	14	16	42	1.87
456924--456965	19	2.3	19	87	4	59	54	9	2	33	1.46
458433--458471	18	2.2	18	95	0	69	5	41	0	53	1.23
459168--459224	24	2.5	21	76	17	60	49	8	1	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460184--460222	18	2.2	18	86	9	53	41	7	5	46	1.55
460476--460511	18	1.9	19	94	5	65	36	16	0	47	1.47
460467--460515	19	2.6	20	84	12	68	40	18	0	40	1.50
460898--462245	182	7.5	180	81	8	1484	27	15	12	44	1.83
461234--461531	163	1.8	163	87	2	445	28	13	13	44	1.81
462193--462231	20	1.9	21	89	5	62	12	15	23	48	1.79
463035--463118	38	2.2	37	91	4	132	11	8	39	40	1.72
463284--463371	38	2.4	37	90	3	149	13	11	37	37	1.81
462811--463573	249	3.0	250	86	8	984	22	12	27	37	1.90
463538--463599	28	2.2	28	94	2	108	12	6	35	45	1.68

Tables:   1   2   3   4