genome.fa.s7731.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007731.1 Hibiscus syriacus cultivar Beakdansim tig00109983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  835416

Tables:   1   2   3   4   

This is table  1  of  4  ( 449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624--10659	16	2.2	17	90	5	56	13	30	30	25	1.94
12115--12180	24	2.8	24	88	0	78	18	15	10	56	1.67
12125--12213	24	3.8	24	83	1	99	20	11	12	56	1.66
14342--14371	10	2.9	10	95	5	51	13	36	30	20	1.90
15836--15937	24	4.3	24	78	7	93	22	11	12	52	1.71
22610--22649	16	2.5	16	87	0	62	27	12	15	45	1.82
23598--23710	57	2.0	58	87	5	167	50	9	14	25	1.73
33952--33984	14	2.4	14	100	0	66	72	0	0	27	0.85
35313--35508	100	1.9	101	83	8	250	68	10	3	17	1.30
35360--35585	100	2.2	100	80	9	239	68	11	2	18	1.30
35537--35613	32	2.5	31	84	10	97	71	10	2	15	1.24
35564--35671	51	2.1	50	82	1	126	71	9	3	15	1.26
35766--35798	12	2.8	12	95	4	59	87	0	12	0	0.53
35764--35795	7	4.9	7	85	14	50	87	0	12	0	0.54
35885--35953	21	3.5	21	64	18	58	44	13	24	17	1.84
36552--36928	2	192.5	2	70	19	226	44	4	1	49	1.33
36818--36895	21	3.8	20	71	19	63	43	3	2	50	1.34
37495--37524	15	1.9	16	93	6	53	23	23	20	33	1.97
45018--45103	2	46.0	2	73	13	76	50	0	0	50	1.00
46014--46157	60	2.4	60	85	0	189	38	11	9	40	1.74
49600--49647	21	2.3	21	85	0	60	25	39	12	22	1.89
49651--49723	21	3.5	21	88	7	112	17	34	27	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50243--50349	34	3.1	34	89	0	160	53	4	3	38	1.40
51241--52125	128	6.9	128	94	0	1547	33	18	23	23	1.97
52196--52236	8	5.2	8	82	5	57	36	29	0	34	1.58
56738--56816	6	13.2	6	94	0	113	6	16	48	29	1.71
57091--57145	22	2.5	22	75	0	56	29	9	23	38	1.85
62667--62715	5	9.8	5	88	0	53	6	40	32	20	1.77
62713--62773	6	10.2	6	89	0	77	6	14	47	31	1.70
62717--62773	30	1.9	30	88	0	87	7	14	49	29	1.69
64026--64063	16	2.5	15	88	12	60	44	0	21	34	1.52
64259--64619	108	3.4	107	80	6	408	40	10	11	37	1.77
65196--65297	50	2.0	50	88	0	150	41	10	11	36	1.77
65493--65786	99	3.0	98	89	1	453	35	11	12	40	1.79
65714--65862	76	1.9	77	83	1	192	35	12	11	40	1.78
65615--65997	175	2.2	174	81	7	438	35	12	12	39	1.81
65604--66034	173	2.5	173	81	7	500	34	12	12	40	1.81
65879--66085	76	2.8	73	82	7	265	33	14	11	40	1.82
65954--66277	171	1.9	170	86	8	460	31	14	9	44	1.77
66123--66574	75	6.1	75	83	5	555	31	13	9	45	1.76
66120--66553	218	2.0	216	87	3	584	32	13	9	44	1.76
66492--66674	100	1.8	100	90	0	294	31	13	10	44	1.78
66592--66769	76	2.3	76	91	0	284	31	14	8	45	1.75
66416--66750	176	1.9	175	86	6	480	31	13	10	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66338--66916	242	2.4	244	86	5	785	31	12	10	45	1.76
67178--67363	73	2.6	70	79	9	198	30	10	10	48	1.72
68324--68378	22	2.5	22	81	0	56	27	14	12	45	1.81
81175--81213	20	2.0	20	89	0	60	33	10	23	33	1.88
85600--85658	28	2.1	28	93	0	100	32	22	11	33	1.90
90518--90583	22	3.0	22	82	4	71	16	33	19	30	1.94
91044--91094	25	2.0	25	96	0	93	25	15	31	27	1.96
91703--92056	177	2.0	176	95	4	642	34	18	12	34	1.88
95397--95425	12	2.5	12	94	5	51	82	0	0	17	0.66
96013--96073	29	2.2	28	86	11	83	57	13	6	22	1.59
96257--96290	2	17.5	2	93	6	61	50	0	0	50	1.00
107227--107266	20	2.0	20	85	0	53	27	20	2	50	1.61
107490--107582	31	3.0	31	82	3	98	37	11	8	41	1.73
108585--108636	24	2.2	24	85	0	68	21	19	11	48	1.80
108769--109036	135	2.0	135	94	5	479	41	21	11	25	1.86
118000--118117	59	2.0	60	81	5	141	31	21	5	41	1.77
120265--120421	85	1.8	86	87	4	237	29	14	16	40	1.87
125030--125071	22	1.9	22	90	0	66	42	7	9	40	1.65
137880--137979	29	3.5	29	83	2	114	37	20	6	37	1.77
137898--138031	29	4.6	29	77	1	124	38	23	8	30	1.84
138105--138140	11	3.6	10	89	10	56	33	30	22	13	1.93
145205--145309	29	3.6	29	82	5	115	41	20	5	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145375--145404	13	2.3	13	100	0	60	13	23	46	16	1.82
145381--145421	18	2.4	17	95	4	73	9	24	48	17	1.76
145401--145426	12	2.2	12	100	0	52	15	23	46	15	1.83
154563--154624	22	2.7	24	78	16	60	1	29	0	69	0.98
154581--154624	10	4.3	10	86	13	63	0	31	0	68	0.90
154588--154636	21	2.3	22	82	3	64	2	28	2	67	1.13
155955--156008	27	1.9	29	88	7	85	27	1	5	64	1.26
156208--156256	26	1.9	26	83	4	64	57	10	8	24	1.59
156523--156599	31	2.5	31	82	4	93	44	6	19	29	1.76
161644--161676	18	1.9	18	88	11	52	66	0	0	33	0.92
161814--161840	14	1.9	14	100	0	54	44	33	0	22	1.53
164816--164885	34	2.1	34	86	5	99	31	10	8	50	1.66
164852--164908	27	2.1	28	83	3	71	36	12	8	42	1.74
164992--165077	33	2.8	30	78	13	104	44	8	9	38	1.66
165011--165081	33	2.2	32	90	5	108	50	7	7	35	1.57
167368--167498	31	4.3	31	84	2	151	28	16	16	38	1.91
167368--167516	62	2.5	62	81	9	166	28	16	17	37	1.92
176716--176777	23	2.9	21	83	7	81	20	33	25	19	1.96
183519--183550	14	2.4	14	94	5	57	40	9	37	12	1.75
186575--186653	22	3.8	22	81	6	94	18	21	30	29	1.97
188725--188808	40	2.1	40	95	2	152	26	14	21	38	1.91
190309--190508	99	2.0	100	82	3	242	35	13	12	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191423--191619	61	3.1	65	89	9	309	27	23	18	29	1.98
199657--199715	28	2.1	28	96	0	109	45	3	22	28	1.68
200088--200220	65	2.1	64	87	7	189	30	24	16	28	1.96
200088--200240	65	2.4	64	84	7	177	30	23	16	28	1.97
202069--202104	16	2.2	16	90	0	54	47	0	2	50	1.15
234558--234674	60	2.0	59	89	1	180	29	18	18	32	1.95
234568--234703	60	2.3	60	83	8	163	29	17	18	34	1.94
235999--236052	18	3.0	18	81	5	56	46	1	0	51	1.11
240948--241004	2	28.5	2	100	0	114	49	0	0	50	1.00
241436--241558	64	1.9	64	85	5	167	30	21	18	30	1.97
245724--245883	64	2.5	64	86	7	209	33	19	20	27	1.96
246390--246491	22	4.7	22	88	1	152	15	23	31	29	1.95
246390--246510	44	2.9	43	84	8	151	16	23	30	29	1.96
246509--246563	18	3.1	18	91	0	83	25	16	27	30	1.96
252716--252875	64	2.5	64	87	5	216	33	20	19	26	1.96
253383--253463	22	3.7	22	89	0	117	18	24	28	28	1.98
253387--253503	22	5.5	22	78	11	100	19	24	27	28	1.99
253382--253519	40	3.3	40	74	10	125	19	25	28	26	1.99
256564--256645	23	3.6	22	76	14	87	24	28	23	24	2.00
259317--259354	20	1.9	20	94	0	67	31	31	15	21	1.94
259365--259523	65	2.5	64	84	3	194	31	22	15	30	1.95
262074--262178	40	2.6	40	87	1	147	36	15	26	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262268--262317	2	25.0	2	100	0	100	50	0	0	50	1.00
262492--262530	15	2.6	15	83	0	60	46	0	0	53	1.00
263935--263961	2	13.5	2	100	0	54	48	0	0	51	1.00
265417--265489	24	3.0	24	81	0	83	52	15	10	21	1.73
270481--270552	24	3.0	24	87	0	108	50	19	13	16	1.79
270483--270552	12	5.8	12	73	6	61	50	20	14	15	1.78
270481--270589	48	2.3	47	84	6	130	48	16	15	19	1.81
270481--270589	24	4.5	25	77	11	102	48	16	15	19	1.81
278861--279273	226	1.8	226	83	3	553	39	14	14	32	1.85
288316--288399	20	4.1	20	73	13	71	22	36	26	14	1.92

Tables:   1   2   3   4