genome.fa.s7731.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007731.1 Hibiscus syriacus cultivar Beakdansim tig00109983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  835416

Tables:   1   2   3   4   

This is table  4  of  4  ( 449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646164--646490	107	3.0	106	83	3	411	30	9	19	40	1.83
646164--646490	54	6.1	54	85	2	381	30	9	19	40	1.83
647242--647594	91	3.9	91	89	0	562	36	15	22	26	1.94
647646--647993	117	3.0	116	87	0	482	38	15	22	24	1.92
650886--651137	137	1.8	137	84	7	350	42	15	13	28	1.85
656519--656606	3	29.3	3	70	21	60	30	3	2	63	1.23
656654--656723	31	2.3	31	100	0	140	31	35	12	20	1.90
656654--656738	31	2.7	31	89	3	82	36	36	10	16	1.83
656833--656940	26	4.4	23	75	10	99	11	41	26	20	1.86
657198--657255	11	5.5	10	78	15	55	75	3	17	3	1.07
657517--657548	6	5.7	6	96	3	50	56	0	34	9	1.32
657512--657552	10	3.8	11	84	12	50	60	0	31	7	1.24
658043--658080	14	2.7	14	84	11	51	21	10	28	39	1.86
660700--660743	22	2.0	21	87	12	63	27	9	4	59	1.48
668746--668802	3	18.7	3	81	3	69	33	0	1	64	1.04
669504--669538	18	1.9	18	100	0	70	11	0	54	34	1.37
680227--680272	20	2.3	19	85	14	58	50	8	15	26	1.73
682801--683023	71	3.1	72	85	7	283	44	2	5	46	1.41
682800--683070	37	7.5	37	78	12	255	45	3	5	46	1.42
682895--683080	69	2.8	65	78	12	132	43	3	5	47	1.43
682853--683141	35	8.5	33	77	15	202	44	2	5	48	1.38
684506--684541	9	3.9	9	89	7	54	13	2	0	83	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685118--685155	19	2.0	19	89	0	58	28	18	21	31	1.97
685568--685627	19	3.2	19	81	11	61	65	0	5	30	1.14
685594--685629	19	1.9	18	94	5	63	69	0	2	27	1.02
686485--686549	23	2.9	22	75	11	69	58	3	0	38	1.14
687864--688026	87	1.9	86	89	3	256	38	8	15	37	1.79
692643--692681	21	1.9	19	85	10	51	53	12	10	23	1.69
694167--694248	3	28.0	3	72	18	57	63	1	2	32	1.15
694196--694247	20	2.6	20	84	6	61	67	1	3	26	1.18
694409--694522	40	2.8	40	85	6	133	24	17	24	33	1.96
695617--695676	12	5.1	12	75	16	54	6	18	1	73	1.14
695608--695675	24	2.9	24	82	10	70	7	19	1	72	1.16
705347--705384	20	1.9	20	94	0	67	36	44	15	2	1.61
716924--716954	2	15.5	2	93	0	53	45	0	0	54	0.99
717461--717498	13	2.7	15	88	12	62	55	0	0	44	0.99
721487--721520	5	6.8	5	96	0	59	23	0	55	20	1.43
721732--721758	14	1.9	14	100	0	54	59	0	0	40	0.98
722077--722101	13	1.9	13	100	0	50	60	0	0	40	0.97
722342--722440	39	2.5	39	86	0	135	28	22	25	24	1.99
722719--722794	28	2.7	28	93	0	125	40	5	10	43	1.62
723415--723448	16	2.1	16	88	0	50	44	11	0	44	1.40
726235--726307	27	2.7	27	95	0	128	42	2	12	42	1.56
728477--728728	102	2.6	97	76	14	239	52	10	3	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728635--728849	117	1.8	119	82	7	278	53	12	3	30	1.55
729101--729152	25	2.1	25	89	7	79	17	34	15	32	1.91
733401--733425	11	2.3	11	100	0	50	92	0	8	0	0.40
735777--735825	26	1.9	25	95	4	89	51	0	12	36	1.40
735994--736037	21	2.0	21	82	8	52	18	22	4	54	1.61
736578--736603	2	13.0	2	100	0	52	50	0	0	50	1.00
737359--737507	64	2.3	64	96	0	271	14	21	25	38	1.92
738246--738299	12	4.6	12	81	4	65	11	16	46	25	1.80
738297--738381	24	3.5	25	74	18	72	45	0	0	54	1.00
738351--738391	2	21.0	2	95	5	75	48	0	0	51	1.00
738405--738441	12	3.0	12	92	4	56	10	16	54	18	1.71
747991--748101	33	3.4	33	75	5	109	36	18	24	20	1.94
758728--758772	23	2.0	21	83	8	54	60	15	2	22	1.46
764897--764939	17	2.6	16	79	13	52	62	4	0	32	1.15
765834--765871	18	2.2	17	90	4	58	10	10	0	78	0.95
767016--767095	3	26.7	3	91	5	117	68	0	0	31	0.90
767570--767660	3	31.0	3	91	8	152	32	0	0	67	0.91
770031--770079	20	2.5	20	89	0	80	32	22	12	32	1.91
770070--770100	14	2.2	14	100	0	62	45	19	0	35	1.51
770514--770556	20	2.2	20	87	8	61	32	6	18	41	1.77
771817--771858	15	2.9	15	80	20	54	52	0	14	33	1.42
772886--772957	20	3.6	20	84	0	72	34	8	22	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
776227--776341	9	12.8	9	71	14	60	28	3	0	67	1.07
776246--776345	3	34.0	3	78	11	100	32	2	0	66	1.03
777883--778172	151	1.9	149	88	6	435	40	6	5	46	1.54
789550--789592	15	2.7	15	89	7	59	34	23	11	30	1.90
799623--799661	15	2.6	15	100	0	78	38	0	17	43	1.50
804789--804916	66	1.9	66	88	0	193	41	22	16	19	1.90
805933--805986	27	2.0	27	92	0	90	20	14	20	44	1.86
805941--806000	27	2.2	27	84	0	75	28	11	16	43	1.83
813054--813080	2	13.5	2	100	0	54	51	0	0	48	1.00
813673--813706	2	17.0	2	100	0	68	50	0	0	50	1.00
815276--815438	44	3.8	44	76	20	150	61	0	12	25	1.32
815279--815376	43	2.3	41	84	11	126	63	0	11	25	1.27
816831--817151	37	8.6	39	74	16	256	43	7	3	44	1.50
816830--817151	113	2.9	111	83	9	352	43	7	3	44	1.50
817000--817027	14	2.0	14	100	0	56	42	7	7	42	1.59
816808--817154	39	9.2	37	73	16	227	43	7	3	45	1.49
823257--823319	32	2.0	32	93	0	108	31	17	3	47	1.63
826658--826781	31	4.0	31	74	9	108	35	21	15	27	1.94
830041--830086	24	1.9	24	82	8	58	39	23	4	32	1.75
831585--831663	31	2.5	32	87	2	106	35	18	21	24	1.96
834420--834445	12	2.2	12	100	0	52	76	0	7	15	0.99
834336--834440	40	2.6	39	71	15	90	71	0	7	20	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835352--835376	12	2.1	12	100	0	50	16	8	0	76	1.02

Tables:   1   2   3   4

The End!