genome.fa.s7731.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007731.1 Hibiscus syriacus cultivar Beakdansim tig00109983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  835416

Tables:   1   2   3   4   

This is table  2  of  4  ( 449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288338--288397	21	2.8	20	85	7	66	23	38	25	13	1.91
292546--292617	30	2.4	30	90	2	117	15	15	22	47	1.82
292725--293083	173	2.1	174	88	4	548	31	14	10	43	1.79
292896--293298	193	2.1	193	87	2	569	29	14	12	43	1.81
293264--293318	20	2.8	20	83	2	76	18	16	21	43	1.88
301935--301984	15	3.3	15	88	0	82	34	28	14	24	1.93
302077--302116	20	2.0	20	95	4	73	60	20	10	10	1.57
304728--304785	30	1.9	31	85	3	82	13	3	36	46	1.61
305363--305503	61	2.3	60	87	6	205	34	9	6	49	1.60
305571--305621	15	3.4	15	70	20	52	45	7	5	41	1.57
305570--305702	33	4.2	31	90	6	214	44	6	7	42	1.57
305570--305621	17	3.3	17	69	20	58	46	7	5	40	1.57
305557--305704	65	2.3	62	85	13	210	43	6	7	42	1.57
305570--305702	63	2.1	64	91	5	218	44	6	7	42	1.57
305659--305766	47	2.3	48	90	4	166	43	4	5	46	1.47
305734--305784	13	3.7	15	77	15	56	33	1	7	56	1.39
305681--305768	2	43.0	2	71	20	58	44	3	4	47	1.40
305976--306014	18	2.2	18	86	4	53	38	12	7	41	1.72
306044--306078	15	2.4	15	95	4	63	42	5	5	45	1.51
306084--306343	2	127.5	2	65	21	96	44	3	6	46	1.44
306044--306184	51	2.7	49	76	14	124	44	4	5	45	1.47
306236--306290	25	2.2	25	90	6	85	45	0	7	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306261--306342	11	7.6	11	76	14	64	47	1	3	47	1.27
306108--306342	38	6.4	34	68	17	109	44	2	6	45	1.43
306414--307143	212	3.5	210	87	7	1046	29	11	8	49	1.69
307092--307147	28	2.0	27	83	10	69	32	5	3	58	1.37
314016--314048	16	2.0	17	88	5	50	45	9	6	39	1.61
314047--314080	17	2.0	17	88	0	50	26	26	29	17	1.98
314788--314840	9	6.1	9	80	6	56	75	0	1	22	0.90
314803--314847	17	2.6	17	85	3	54	77	0	0	22	0.76
314809--314846	9	4.3	9	86	6	51	81	0	0	18	0.69
315033--315075	22	1.9	23	85	4	61	62	0	9	27	1.25
315033--315110	22	3.6	22	74	19	58	66	0	6	26	1.15
314966--315090	65	1.9	63	81	15	148	60	1	8	28	1.36
315082--315138	15	3.6	15	73	17	53	66	1	0	31	1.02
315534--315616	37	2.2	37	84	0	103	31	10	15	42	1.82
316359--318051	106	16.0	106	89	1	2488	23	18	24	34	1.96
318860--318915	22	2.5	22	91	0	94	25	14	25	35	1.93
319309--319655	172	2.0	173	92	3	574	26	17	20	36	1.94
319688--319735	19	2.6	18	81	12	53	4	8	6	81	0.98
324293--324321	3	9.7	3	100	0	58	68	0	0	31	0.89
324539--324596	8	7.1	8	92	3	62	56	0	1	41	1.09
324553--324610	4	14.5	4	92	0	89	48	0	3	48	1.18
324553--324610	6	9.7	6	90	0	89	48	0	3	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324748--324811	29	2.2	28	81	13	69	64	1	6	28	1.27
324795--324850	5	10.8	5	81	11	60	58	0	3	37	1.15
325314--325406	37	2.5	37	85	0	114	30	12	13	43	1.82
327032--327139	57	1.9	57	96	0	198	38	9	13	37	1.77
329411--330182	106	7.3	106	95	0	1357	22	17	25	33	1.96
330677--331421	85	8.8	86	85	3	946	23	20	26	29	1.99
330677--331421	169	4.4	169	94	0	1219	23	20	26	29	1.99
341971--342035	2	32.0	2	96	3	121	49	1	0	49	1.10
342547--342607	23	2.7	23	89	0	104	16	29	26	27	1.97
343502--343615	60	1.9	60	92	0	192	35	19	14	30	1.92
349549--349591	21	2.0	22	82	13	54	39	20	27	11	1.88
349567--349624	30	1.9	30	89	0	89	34	24	27	13	1.93
351259--351292	16	2.1	16	100	0	68	44	11	11	32	1.77
357831--357901	22	3.2	22	97	0	133	23	16	18	40	1.90
360567--360619	21	2.5	21	93	0	88	18	22	20	37	1.94
360567--360629	21	3.0	21	83	4	56	23	20	19	36	1.95
360837--360902	22	3.0	22	86	0	87	25	37	13	22	1.91
361237--361292	20	2.9	19	84	5	76	17	19	23	39	1.92
363218--363375	20	8.6	20	75	16	135	43	20	18	17	1.89
363381--363469	20	4.4	20	85	0	97	22	19	20	38	1.94
363947--364044	21	4.7	20	70	8	70	23	33	20	22	1.97
364449--364504	26	2.2	26	96	0	103	33	10	8	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366073--366126	24	2.2	24	93	0	90	40	20	18	20	1.91
366073--366140	24	2.8	24	84	0	64	38	20	17	23	1.93
366968--367014	20	2.3	20	92	0	76	21	19	27	31	1.97
367001--367114	20	5.7	20	84	2	156	20	20	21	38	1.94
366988--367114	40	3.2	38	80	9	146	20	19	22	37	1.94
367111--367151	21	2.0	21	95	0	73	41	17	24	17	1.89
367451--367707	36	7.4	36	77	14	227	49	3	5	42	1.40
367440--367707	75	3.8	73	77	15	262	49	2	4	42	1.39
367576--367617	11	3.8	11	78	12	50	50	4	2	42	1.36
367579--367623	22	2.0	22	95	0	81	53	4	2	40	1.33
367505--367694	96	2.0	96	89	4	294	49	3	5	41	1.42
367596--367708	35	3.2	35	72	19	108	51	1	5	41	1.35
367722--367755	3	11.3	3	100	0	68	35	0	0	64	0.94
370941--370983	22	2.0	22	86	4	61	32	6	13	46	1.71
378819--378861	22	2.0	21	86	4	59	32	9	20	37	1.85
379908--379956	22	2.2	22	82	13	57	32	2	20	44	1.63
383118--383166	23	2.1	23	84	0	62	20	16	18	44	1.86
385992--386078	39	2.2	39	91	0	147	18	22	26	32	1.97
386003--386096	39	2.4	39	83	0	116	20	27	25	26	1.99
387179--387213	15	2.3	15	90	0	61	31	11	8	48	1.69
387824--388043	110	2.0	110	92	0	368	30	11	14	44	1.80
392632--392658	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393235--393259	2	12.5	2	100	0	50	52	0	0	48	1.00
394221--394297	32	2.4	32	78	8	86	33	29	20	15	1.94
404903--404952	11	4.6	10	82	12	55	22	2	2	74	1.03
404895--404950	19	2.8	20	76	15	53	19	1	3	75	1.05
410551--410610	14	4.1	16	78	18	69	46	0	0	53	1.00
410548--410604	19	3.2	17	78	12	53	45	0	0	54	0.99
412450--412494	13	3.5	13	79	11	56	15	40	22	22	1.91
412439--412494	26	2.2	25	87	6	69	16	37	21	25	1.93
415512--415569	26	2.3	26	80	14	68	31	10	8	50	1.67
417090--417265	36	5.0	36	84	3	198	21	23	21	34	1.97
417089--417259	72	2.4	71	84	5	222	21	23	21	33	1.97
417881--417911	13	2.4	13	94	0	53	38	32	9	19	1.84
418632--418676	15	2.8	17	74	22	51	48	0	0	51	1.00
420011--420040	16	1.9	16	93	6	53	50	6	3	40	1.45
427495--427541	14	3.1	15	81	9	51	25	10	8	55	1.62
427712--427775	2	32.0	2	100	0	128	50	0	0	50	1.00
433164--433225	27	2.3	27	94	0	106	17	14	22	45	1.85
433701--433753	21	2.5	21	81	6	72	20	26	18	33	1.96
433743--433794	21	2.5	21	87	3	70	38	17	23	21	1.93
433728--433959	41	5.7	41	71	7	123	33	19	19	27	1.96
433814--433868	20	2.7	21	80	5	67	20	20	16	43	1.88
433870--433959	20	4.4	20	84	2	126	41	17	21	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434544--434591	19	2.5	19	93	0	78	47	20	18	12	1.81
434504--434621	52	2.2	53	86	1	157	44	22	20	12	1.85
434617--434754	52	2.6	52	91	2	213	10	23	21	44	1.83
434617--434762	19	8.1	19	74	17	141	10	23	19	45	1.82
436455--436757	92	3.3	94	92	4	485	21	12	19	46	1.82
437202--437268	21	3.2	20	67	10	53	25	34	19	20	1.96
437150--437268	42	2.8	42	79	9	118	23	35	17	23	1.95
438621--438656	14	2.6	14	95	0	63	33	0	22	44	1.53
438763--438828	19	3.7	19	76	19	79	45	21	22	10	1.82
438840--438964	33	3.8	33	85	0	169	14	21	16	48	1.81

Tables:   1   2   3   4