genome.fa.s7734.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007734.1 Hibiscus syriacus cultivar Beakdansim tig00109991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  739340

Tables:   1   2   3   

This is table  2  of  3  ( 342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309417--309449	7	4.9	7	85	7	50	33	0	0	66	0.92
309424--309448	13	1.9	13	100	0	50	36	0	0	64	0.94
310994--311067	37	2.0	37	100	0	148	40	18	24	16	1.90
313099--313302	110	1.9	108	83	4	268	32	23	20	23	1.98
313998--314466	124	3.8	124	87	1	654	32	25	17	25	1.97
314646--314697	15	3.6	15	80	14	56	42	1	0	55	1.10
314653--314697	21	2.1	21	88	8	65	42	2	0	55	1.12
317518--317560	19	2.3	19	84	8	52	30	0	4	65	1.13
320127--320214	42	2.1	41	83	6	106	50	0	4	45	1.22
320160--320220	27	2.3	27	75	22	67	52	0	0	47	1.00
324008--324092	40	2.2	38	87	4	116	52	5	11	29	1.61
331762--331792	4	7.8	4	100	0	62	77	0	0	22	0.77
332245--332290	2	23.0	2	100	0	92	50	0	0	50	1.00
333386--333467	43	1.9	42	87	7	121	26	2	20	50	1.61
333571--333666	29	3.2	29	78	5	102	41	9	9	39	1.70
333753--333858	28	3.6	28	80	12	115	38	11	9	40	1.74
333753--333858	31	3.6	30	81	5	126	38	11	9	40	1.74
337500--337566	30	2.2	30	82	15	77	26	22	7	43	1.80
338822--338898	39	2.0	39	86	0	109	41	20	9	28	1.83
346643--346701	20	3.0	20	78	9	77	27	30	22	20	1.98
347637--347695	26	2.3	26	90	0	100	37	20	5	37	1.75
348467--348518	22	2.4	21	75	6	59	55	3	5	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350206--350327	45	2.8	45	84	2	167	30	19	8	41	1.81
352608--352652	23	2.0	23	90	0	72	33	8	8	48	1.65
358020--358047	13	2.2	13	100	0	56	35	35	0	28	1.58
364813--364866	24	2.2	24	93	0	90	40	20	18	20	1.91
364813--364880	24	2.8	24	84	0	64	38	20	17	23	1.93
365729--365976	20	12.3	21	80	7	196	31	18	20	30	1.96
365729--365839	41	2.8	41	89	5	165	35	18	20	26	1.95
365732--365933	61	3.4	58	80	7	147	29	18	19	32	1.96
365931--365970	21	1.9	21	89	0	62	42	17	22	17	1.89
367070--367237	60	2.8	58	75	8	153	42	5	17	34	1.73
371606--371640	17	1.9	18	88	11	54	25	0	0	74	0.82
371606--371652	13	3.4	14	77	19	53	25	2	0	72	0.96
371613--371659	19	2.5	19	79	3	51	27	2	0	70	0.99
372538--372564	4	6.8	4	100	0	54	51	0	0	48	1.00
373076--373147	37	2.0	36	88	2	108	20	20	19	38	1.93
373209--373242	2	17.0	2	100	0	68	50	0	0	50	1.00
374078--374128	23	2.3	23	86	3	68	60	1	3	33	1.26
374054--374140	19	4.4	19	69	18	61	57	1	3	37	1.23
374141--374210	23	3.0	23	72	16	63	50	1	1	47	1.19
376108--376168	31	2.0	30	84	6	79	24	6	11	57	1.57
379092--379132	3	13.7	3	100	0	82	68	0	0	31	0.90
383262--383375	59	1.9	60	87	5	169	32	18	6	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383247--383410	60	2.7	59	80	10	174	33	20	5	40	1.75
383597--383725	29	4.4	29	79	7	134	44	3	20	31	1.69
383638--383751	60	1.9	60	88	0	174	44	4	16	34	1.68
384784--384888	40	2.7	38	80	5	111	45	11	12	30	1.77
385113--385172	29	2.1	28	81	12	68	36	3	11	48	1.56
385279--385304	13	2.0	13	100	0	52	30	23	7	38	1.83
388870--389145	135	2.0	136	95	3	493	34	11	21	32	1.89
391053--391159	31	3.5	31	92	2	171	20	17	20	41	1.91
391053--391175	31	4.0	31	90	2	167	21	18	21	38	1.94
391350--391450	31	3.3	31	85	0	148	29	15	20	33	1.94
394752--394839	45	2.0	45	95	0	158	14	14	21	48	1.80
395764--395837	39	1.9	39	86	8	107	25	10	10	52	1.68
395816--395859	21	2.1	21	91	0	70	18	18	9	54	1.69
396950--396974	12	2.1	12	100	0	50	52	8	0	40	1.31
405189--405261	29	2.4	30	77	8	78	43	5	15	35	1.69
405630--405660	16	2.0	16	93	6	55	41	6	25	25	1.79
405793--405862	37	1.9	36	85	8	97	48	4	0	47	1.21
406861--406930	30	2.3	30	82	2	77	22	10	14	52	1.71
408936--409064	63	2.0	63	86	0	177	22	25	28	23	1.99
408988--409174	87	2.1	87	82	3	216	22	27	28	21	1.99
410907--410967	16	3.9	15	79	10	59	21	21	11	45	1.82
413931--413985	16	3.4	16	79	2	65	58	1	1	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414208--414272	30	2.2	30	88	2	96	43	24	10	21	1.84
414606--414643	12	3.2	12	92	0	67	7	15	50	26	1.72
414606--414660	24	2.3	24	90	0	83	12	14	47	25	1.80
414659--414760	32	3.2	32	78	12	102	47	0	0	52	1.00
415048--415148	46	2.2	47	82	8	136	41	0	30	26	1.62
415360--415432	28	2.6	28	86	0	101	46	28	0	24	1.53
415360--415426	21	3.2	21	82	4	73	46	28	0	25	1.53
415652--415720	28	2.6	26	82	8	93	44	7	4	43	1.51
415703--415859	18	8.2	18	69	18	86	43	3	4	48	1.39
415691--415867	49	3.6	49	70	20	143	44	3	3	48	1.38
415638--415876	15	16.4	15	67	20	107	43	4	4	48	1.41
415660--415848	100	1.9	100	90	2	301	44	4	3	47	1.40
415801--415886	2	45.5	2	69	23	53	41	0	4	53	1.21
415638--415820	28	6.5	28	66	16	83	44	5	3	46	1.44
415793--415886	9	10.4	9	67	30	51	42	0	4	53	1.20
415647--415881	100	2.3	96	81	9	256	43	4	3	48	1.40
415800--415887	18	5.1	18	70	25	66	40	0	4	54	1.21
415793--415886	30	3.1	30	76	14	88	42	0	4	53	1.20
419003--419241	87	2.7	87	80	7	252	25	24	28	21	1.99
424087--424415	128	2.6	127	83	4	367	36	20	20	22	1.95
424116--424441	85	3.8	84	85	4	395	34	22	21	22	1.97
424118--424441	43	7.6	42	80	6	321	33	22	21	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427849--428123	41	6.6	42	86	3	362	32	17	22	27	1.96
427849--428169	41	7.8	41	82	6	319	32	17	21	28	1.96
427849--428169	166	1.9	165	83	5	416	32	17	21	28	1.96
439869--439893	2	12.5	2	100	0	50	52	0	0	48	1.00
443766--443795	15	2.0	15	93	0	51	56	3	0	40	1.16
450978--451023	21	2.2	21	84	0	56	39	23	10	26	1.88
452932--453284	189	1.9	188	83	4	460	47	6	5	40	1.52
455817--455860	22	2.1	21	83	8	54	59	0	6	34	1.24
461171--461209	20	2.0	20	100	0	78	23	10	15	51	1.73
471469--471511	21	2.0	21	95	0	77	51	13	11	23	1.74
472720--472773	21	2.6	22	80	11	60	48	3	12	35	1.60
488031--488077	16	3.1	15	79	8	51	25	2	4	68	1.19
493711--493751	18	2.3	18	91	4	66	63	2	4	29	1.28
495342--495456	42	2.8	42	82	4	126	33	19	20	26	1.96
496531--496568	19	2.0	20	85	15	53	5	34	0	60	1.19
497541--497604	21	3.0	21	88	4	101	23	26	23	26	2.00
498137--498182	22	2.1	22	95	0	83	17	21	34	26	1.95
502648--502683	15	2.4	15	90	9	56	50	0	0	50	1.00
504011--504049	10	3.9	10	96	0	69	20	35	0	43	1.52
504007--504066	10	6.0	10	86	0	66	25	31	0	43	1.55
504007--504056	20	2.5	20	86	0	73	26	34	0	40	1.56
504091--504135	23	2.0	22	83	12	56	31	0	4	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504105--504143	18	2.2	18	95	4	71	33	0	2	64	1.08
505997--506044	22	2.2	22	96	0	87	12	25	31	31	1.92
512887--512984	22	4.5	22	89	0	142	17	24	27	30	1.97
516784--516812	2	14.5	2	100	0	58	48	0	0	51	1.00
519749--519845	31	3.2	31	62	11	83	30	12	17	39	1.87
519780--519875	29	3.2	29	63	11	77	35	14	15	34	1.88
519700--519874	60	2.9	60	94	4	291	33	14	15	37	1.88
521691--521728	15	2.5	15	95	0	67	23	60	2	13	1.45
522676--522735	29	2.0	31	90	6	97	35	6	16	41	1.75
522800--522866	19	3.5	19	91	0	98	40	10	13	35	1.79

Tables:   1   2   3