genome.fa.s7734.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007734.1 Hibiscus syriacus cultivar Beakdansim tig00109991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  739340

Tables:   1   2   3   

This is table  3  of  3  ( 342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522972--523013	21	2.0	21	90	0	66	23	19	28	28	1.98
523295--523364	34	2.1	32	89	5	104	31	15	31	21	1.95
524387--524420	5	6.8	5	100	0	68	82	0	0	17	0.67
525789--525858	30	2.3	29	77	15	72	47	4	10	38	1.57
530161--530261	51	2.0	51	90	0	157	42	14	11	30	1.82
530869--531609	363	2.0	366	94	2	1301	27	20	20	31	1.97
534948--534972	2	12.5	2	100	0	50	52	0	48	0	1.00
536152--536532	189	2.0	192	94	2	678	28	19	11	40	1.87
536990--537019	15	1.9	16	93	6	53	53	0	0	46	1.00
536990--537033	15	2.9	14	83	12	52	52	0	0	47	1.00
539724--539762	2	19.5	2	100	0	78	48	0	0	51	1.00
546646--546678	3	11.3	3	87	6	50	60	0	0	39	0.97
546633--546692	6	10.2	6	78	8	52	53	1	1	43	1.20
546981--547174	55	3.6	54	87	6	268	29	25	13	31	1.94
547025--547340	55	5.8	55	83	8	233	25	25	15	34	1.95
546958--547336	110	3.5	109	78	7	306	24	25	15	34	1.95
547148--547339	54	3.5	54	86	3	253	23	24	17	33	1.96
561427--561459	3	11.3	3	87	6	50	60	0	0	39	0.97
561414--561473	6	10.2	6	78	8	52	53	1	1	43	1.20
561807--561918	59	1.9	59	98	0	215	20	18	26	33	1.96
562944--562983	2	20.0	2	100	0	80	50	0	0	50	1.00
564417--564473	30	1.9	30	89	7	89	21	21	42	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564626--564727	50	2.0	50	100	0	204	25	1	15	56	1.50
565237--565276	20	2.0	20	100	0	80	35	15	20	30	1.93
565504--565553	24	2.1	24	100	0	100	54	30	0	16	1.42
575516--575573	22	2.6	22	81	13	73	37	25	22	13	1.91
576884--577002	48	2.5	48	85	10	172	40	15	7	36	1.75
576962--577126	40	4.2	40	91	3	253	36	19	7	36	1.81
576962--577161	79	2.5	79	87	1	265	35	19	8	37	1.81
576962--577161	40	5.0	40	87	2	242	35	19	8	37	1.81
577141--577175	14	2.5	14	95	0	61	42	0	8	48	1.33
580229--580255	9	3.0	9	100	0	54	77	0	0	22	0.76
586817--586849	13	2.4	14	85	10	50	27	21	12	39	1.88
587606--587632	14	1.9	14	100	0	54	37	11	7	44	1.68
589858--589895	19	2.0	19	100	0	76	52	10	10	26	1.68
596889--596925	2	18.5	2	100	0	74	51	0	0	48	1.00
600100--600243	72	2.0	72	100	0	288	23	12	2	61	1.44
601744--601793	19	2.4	21	87	9	68	52	2	0	46	1.12
604987--605102	29	3.9	29	73	11	83	42	18	15	24	1.88
614446--614498	21	2.5	21	87	0	79	20	24	18	35	1.95
614718--614783	22	3.0	22	84	0	87	25	37	13	22	1.91
615159--615209	20	2.5	20	90	0	75	11	11	21	54	1.68
627137--627259	20	6.5	20	80	11	143	42	21	19	16	1.89
627140--627291	73	2.1	73	92	0	250	44	20	19	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627306--627408	20	5.2	20	88	4	154	21	18	21	38	1.93
627898--627941	21	2.3	19	88	11	63	31	34	9	25	1.87
629389--629424	14	2.6	14	90	0	54	30	0	22	47	1.52
629530--629583	14	3.5	14	73	22	54	44	20	24	11	1.83
629530--629605	33	2.3	34	97	2	145	44	19	23	11	1.84
629543--629611	19	3.8	19	73	21	76	46	18	21	13	1.83
629650--629741	20	4.6	20	94	2	159	17	21	25	35	1.95
631928--631963	14	2.5	14	90	4	54	8	11	22	58	1.59
632154--632207	24	2.2	24	90	0	81	42	20	18	18	1.89
633049--633155	20	5.3	20	91	0	169	23	18	27	30	1.98
633142--633210	20	3.5	20	91	0	102	20	20	20	39	1.93
633048--633175	40	3.2	40	85	2	159	24	18	25	32	1.97
633048--633175	60	2.1	60	84	9	172	24	18	25	32	1.97
634155--634192	20	1.9	20	88	0	58	21	26	10	42	1.85
640373--640414	21	2.0	21	100	0	84	28	14	42	14	1.84
642322--642385	2	35.0	2	77	22	70	48	0	1	50	1.10
643518--643552	11	3.2	11	100	0	70	74	8	0	17	1.06
654903--654952	19	2.6	19	100	0	100	32	20	18	30	1.96
656924--657155	116	2.0	116	98	0	446	48	19	9	22	1.78
658918--658988	37	1.9	37	85	0	97	29	9	30	29	1.89
659282--659323	15	2.9	15	78	3	50	59	0	0	40	0.97
659855--659913	31	1.9	31	86	6	84	27	8	18	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661090--661128	15	2.6	15	95	0	69	25	5	0	69	1.09
660273--661114	474	1.8	463	88	5	1301	36	11	9	42	1.73
661799--661837	19	2.1	18	86	13	53	53	2	5	38	1.37
661880--661924	19	2.3	20	81	7	58	37	0	0	62	0.96
661993--662039	19	2.5	18	80	16	51	51	0	0	48	1.00
661993--662039	18	2.5	18	82	6	58	51	0	0	48	1.00
664064--664111	20	2.4	20	80	13	62	54	12	10	22	1.68
670409--670457	24	2.0	25	88	4	73	14	18	30	36	1.90
670460--670573	5	21.4	5	76	15	61	69	0	0	28	1.00
670474--670563	11	8.1	11	80	9	85	70	1	0	28	0.95
670459--670562	3	37.0	3	73	16	89	68	0	0	30	0.96
670463--670574	38	2.9	39	77	6	115	69	0	0	28	1.00
670459--670558	14	7.4	13	73	15	51	68	1	0	31	0.97
670796--671658	112	7.3	121	85	8	995	24	20	15	39	1.91
671688--671865	76	2.3	76	91	1	277	33	22	19	24	1.97
675106--675329	114	2.0	114	94	0	394	32	20	14	33	1.92
684117--684207	3	32.0	3	75	10	57	72	1	0	26	0.91
684123--684166	15	2.9	15	89	0	70	84	0	0	15	0.63
684121--684168	21	2.3	21	85	10	71	81	0	0	18	0.70
684121--684166	24	1.9	24	90	0	74	82	0	0	17	0.67
684157--684206	19	2.6	19	83	0	64	68	2	0	30	1.01
684176--684220	22	2.0	22	83	8	56	71	2	2	24	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686296--686390	38	2.5	38	84	6	138	36	41	7	14	1.74
686774--686810	14	2.7	13	88	12	56	67	0	0	32	0.91
689838--689867	16	1.9	15	93	6	51	13	26	13	46	1.80
690846--690879	3	11.3	3	100	0	68	67	0	32	0	0.91
697062--697111	25	2.0	25	100	0	100	36	8	24	32	1.84
703264--703289	3	8.7	3	100	0	52	69	0	0	30	0.89
704333--704369	18	2.0	18	89	5	56	62	2	0	35	1.10
704979--705040	31	2.0	31	90	0	97	37	9	25	27	1.87
707996--708043	25	2.0	24	87	4	69	25	4	16	54	1.60
719964--720285	54	5.9	55	93	5	541	31	16	25	26	1.96
720198--720553	52	6.8	51	79	11	271	32	20	24	22	1.98
719973--720553	54	10.9	54	84	10	476	31	18	25	24	1.98
719973--720547	107	5.4	107	82	10	494	31	18	25	24	1.97
720397--720609	56	3.9	56	83	6	188	31	23	23	21	1.98

Tables:   1   2   3

The End!