genome.fa.s7735.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007735.1 Hibiscus syriacus cultivar Beakdansim tig00109992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  534668

Tables:   1   2   3   

This is table  2  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179786--179857	37	2.0	36	88	2	108	30	1	0	68	0.99
179733--179879	43	3.4	42	75	13	138	29	2	1	67	1.10
179733--179907	88	2.0	82	84	9	217	27	1	1	69	1.08
179805--179890	32	2.7	31	81	12	95	25	2	1	70	1.06
179822--179992	51	3.3	50	77	12	143	19	5	1	72	1.14
179756--179907	43	3.5	42	71	15	112	27	1	1	69	1.08
179844--179992	49	2.9	49	78	11	133	18	6	2	72	1.16
179816--179939	13	9.2	13	69	20	69	19	3	0	76	0.97
179847--179951	24	4.3	24	72	13	72	20	4	0	74	1.06
183016--183059	7	6.4	7	81	5	54	79	0	18	2	0.83
183020--183072	13	4.0	13	85	9	72	79	1	16	1	0.92
183021--183073	27	2.0	26	89	10	81	77	1	16	3	1.01
183145--183282	69	2.0	69	85	2	188	36	21	15	26	1.94
184208--184327	32	3.8	32	85	2	134	28	14	20	37	1.91
184913--185238	106	3.1	106	87	0	436	34	22	18	23	1.96
185484--185660	87	2.0	87	95	0	318	32	19	11	36	1.88
185571--185810	102	2.4	102	89	0	363	32	19	11	36	1.88
185848--185950	36	2.8	37	92	2	181	28	22	12	36	1.91
185861--186047	102	1.8	102	84	6	254	27	20	12	39	1.88
185848--186081	36	6.6	36	75	17	168	26	20	13	39	1.89
186165--186322	84	1.9	85	85	1	219	29	23	19	27	1.98
187318--187356	2	19.5	2	84	10	53	43	2	0	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187271--187348	20	3.9	19	74	15	68	37	2	0	60	1.11
187272--187448	39	4.4	39	72	16	121	29	2	1	66	1.13
187380--187415	17	2.1	17	94	0	63	19	0	5	75	1.00
187395--187453	23	2.6	23	78	5	66	22	5	3	69	1.23
187376--187448	13	5.7	13	73	13	62	21	2	2	72	1.10
188886--188926	18	2.3	18	87	4	57	29	7	2	60	1.36
191114--191185	26	3.0	24	68	27	62	26	6	4	62	1.39
191214--191298	35	2.5	33	78	14	91	25	8	10	55	1.62
199712--199754	18	2.4	18	100	0	86	34	32	0	32	1.58
202004--202060	20	2.8	21	76	10	64	12	24	36	26	1.91
209403--209475	30	2.4	30	88	0	110	32	24	17	24	1.97
209461--209534	31	2.4	31	84	4	87	33	21	14	29	1.94
210110--210167	20	2.7	20	84	10	71	25	20	20	32	1.97
210775--210802	3	9.3	3	100	0	56	67	0	32	0	0.91
213527--213654	30	4.2	30	87	1	175	33	23	19	23	1.97
214264--214321	20	2.7	20	84	10	71	25	20	20	32	1.97
214929--214953	3	8.3	3	100	0	50	68	0	32	0	0.90
217510--217555	13	3.5	13	73	26	51	43	17	2	36	1.61
217677--217779	30	3.4	30	91	0	170	32	23	20	24	1.98
218441--218478	20	1.9	20	94	0	67	23	18	21	36	1.95
218441--218498	20	2.7	20	81	10	62	25	18	20	34	1.96
218487--218536	19	2.6	19	96	0	91	30	30	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218505--218645	64	2.2	63	81	6	160	29	21	15	33	1.95
223919--224020	18	5.5	18	74	6	69	47	11	33	7	1.69
223932--224019	39	2.3	39	84	4	106	47	11	34	6	1.66
223957--224019	21	3.1	21	80	8	78	49	11	31	7	1.67
231983--232014	2	16.0	2	93	0	55	50	3	0	46	1.17
233952--234022	30	2.4	30	92	0	115	29	23	21	25	1.99
234052--234201	80	1.9	79	90	4	239	40	15	16	27	1.88
235345--235388	21	2.1	21	100	0	88	27	31	11	29	1.91
238177--238232	30	1.9	30	82	7	71	53	25	7	14	1.66
247515--247561	22	2.1	23	88	4	69	38	25	12	23	1.90
251022--251104	33	2.5	33	98	0	157	24	26	18	31	1.97
258565--258669	34	3.1	34	87	2	122	44	25	5	23	1.75
269080--269130	21	2.4	21	90	0	75	27	9	21	41	1.84
269255--269337	22	3.7	22	72	15	64	61	3	2	32	1.26
271056--271080	2	12.5	2	100	0	50	52	0	0	48	1.00
271778--271870	4	21.8	4	72	12	69	30	2	2	65	1.16
271777--271866	18	5.2	17	75	12	85	30	2	2	65	1.16
271778--271848	22	3.3	21	82	9	74	30	2	1	64	1.16
273932--274005	33	2.2	34	95	4	132	16	16	5	62	1.51
274073--274124	17	3.0	17	83	5	68	40	0	7	51	1.30
278542--278890	171	2.0	172	88	4	526	37	18	13	29	1.90
286251--286276	13	2.0	13	100	0	52	23	15	15	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287917--288026	27	4.1	27	100	0	220	25	10	22	40	1.86
287917--288016	14	7.4	14	64	29	56	26	11	22	41	1.86
289569--289709	66	2.1	66	98	0	273	22	25	17	34	1.96
292495--292532	10	3.9	10	79	6	51	76	0	0	23	0.79
294153--294193	16	2.7	16	88	7	59	60	17	9	12	1.57
294259--294333	10	7.7	10	67	21	52	58	20	10	10	1.60
294263--294327	16	4.1	16	89	0	103	58	21	10	9	1.59
295078--295133	14	4.3	14	80	17	66	53	25	12	8	1.67
295058--295132	24	3.1	24	88	3	98	56	21	10	12	1.66
296330--296386	29	2.0	29	92	0	96	14	31	31	22	1.93
296403--296427	12	2.1	12	100	0	50	40	8	36	16	1.77
296484--296546	33	1.9	33	90	0	99	9	38	28	23	1.86
296528--296560	14	2.4	14	94	0	57	6	30	39	24	1.79
296603--296660	29	2.0	29	89	0	89	22	27	36	13	1.92
299392--299957	291	1.9	291	83	8	738	42	18	11	27	1.85
300857--301678	217	3.8	215	89	3	1207	49	7	12	29	1.69
301698--301783	2	42.0	2	77	13	86	47	2	3	46	1.32
301699--302024	29	11.2	30	64	23	110	45	4	5	44	1.46
301775--301835	27	2.2	28	88	2	88	47	8	4	39	1.55
301815--301936	46	2.6	44	75	8	111	45	7	4	42	1.53
302022--302065	20	2.2	20	87	4	61	18	2	31	47	1.61
302083--302148	22	3.0	22	70	16	55	39	3	1	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302084--302125	14	2.9	15	83	16	54	33	2	0	64	1.07
302107--302173	33	2.0	33	85	8	91	40	5	4	49	1.48
302100--302173	35	2.3	32	81	11	89	39	5	4	51	1.44
302157--302227	18	3.8	18	78	14	81	40	9	8	40	1.69
302258--302338	24	3.2	24	78	13	76	40	7	7	44	1.60
302304--302338	18	1.9	18	88	0	52	42	8	2	45	1.49
302300--302379	20	4.0	20	74	11	74	41	10	3	45	1.56
302299--302402	40	2.7	40	78	10	117	43	7	3	45	1.51
302322--302391	27	2.6	27	80	8	88	42	7	2	47	1.45
302523--302580	17	3.5	17	69	21	59	41	6	6	44	1.58
302454--302687	33	7.2	33	78	14	245	42	6	7	43	1.59
302466--302698	18	13.1	18	68	20	143	43	6	7	42	1.59
302570--302701	58	2.5	51	81	15	183	43	6	6	43	1.55
302591--302656	25	2.6	25	82	2	78	40	6	9	43	1.61
302572--302686	58	2.0	58	94	0	203	42	6	7	43	1.58
302541--302744	91	2.2	90	83	8	245	42	7	5	44	1.56
302686--302831	21	6.9	21	68	20	81	42	6	4	46	1.49
302718--302958	88	2.9	88	81	11	242	44	3	2	48	1.35
302863--302947	44	1.9	44	86	9	120	47	2	1	49	1.22
304591--304632	19	2.2	20	95	4	77	35	9	14	40	1.78
305720--305773	23	2.3	23	80	0	63	25	9	25	38	1.86
306578--306612	16	2.2	16	89	0	52	31	17	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311337--311385	5	9.8	5	79	16	57	20	53	22	4	1.63
311337--311368	14	2.3	14	100	0	64	21	56	21	0	1.43
313211--313242	2	16.0	2	100	0	64	0	50	0	50	1.00
318929--318976	24	2.0	24	100	0	96	29	29	8	33	1.86
324663--324704	21	2.0	20	86	4	57	40	7	14	38	1.73
324890--324931	21	2.0	20	86	4	57	38	14	7	40	1.73
332165--332211	16	2.9	16	96	0	85	61	2	0	36	1.08
334543--334611	28	2.3	30	80	7	79	33	18	4	43	1.70
335799--335837	19	2.1	19	95	4	71	41	7	0	51	1.31
336601--336740	36	3.9	35	86	4	192	17	23	20	37	1.94

Tables:   1   2   3