genome.fa.s7735.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007735.1 Hibiscus syriacus cultivar Beakdansim tig00109992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  534668

Tables:   1   2   3   

This is table  3  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346819--346899	23	3.7	22	83	4	92	18	25	32	23	1.97
350698--350737	21	1.9	21	85	10	55	35	10	2	52	1.48
354416--354443	14	2.0	14	100	0	56	14	35	7	42	1.73
358796--358857	29	2.1	30	81	3	72	16	16	19	48	1.81
363155--363206	9	6.1	9	78	13	56	36	1	1	59	1.19
363148--363204	16	3.5	16	88	4	78	36	1	1	59	1.18
364941--365004	33	1.9	33	90	0	101	18	40	17	23	1.91
365267--365298	3	10.7	3	93	0	55	34	28	34	3	1.73
365270--365310	12	3.4	12	86	0	55	34	21	34	9	1.87
365453--365499	13	3.6	13	82	0	58	17	2	12	68	1.31
369639--369817	21	8.6	20	77	11	157	31	22	21	24	1.98
369659--369821	41	4.0	41	84	7	197	32	20	21	25	1.97
369680--369752	20	3.6	20	77	17	87	36	19	20	23	1.95
369949--369981	6	5.5	6	100	0	66	33	51	15	0	1.43
370586--370642	21	2.8	20	77	15	62	33	24	19	22	1.97
372023--372339	105	3.0	106	96	1	584	42	15	5	35	1.72
383781--383823	20	2.2	20	86	0	59	32	20	13	32	1.92
403534--403571	18	2.1	18	95	0	67	15	18	47	18	1.83
403924--403966	20	2.2	20	86	0	59	32	20	13	32	1.92
407713--407865	60	2.5	60	77	6	150	30	22	4	42	1.74
417571--417608	2	19.0	2	100	0	76	50	0	0	50	1.00
419289--419381	32	2.9	31	92	4	159	45	12	17	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420057--420253	106	1.9	106	81	10	242	53	10	8	27	1.63
420198--420279	30	2.8	29	79	5	92	54	10	9	24	1.65
420238--420325	43	2.0	45	85	8	112	53	6	11	28	1.62
423134--423167	18	1.9	17	88	5	50	44	14	2	38	1.61
424512--424573	20	3.1	20	97	0	115	11	20	19	48	1.79
424565--424636	22	3.4	22	73	11	87	18	18	25	38	1.92
424565--424658	41	2.3	41	96	0	179	19	18	23	39	1.92
424588--424655	19	3.4	19	71	11	64	19	17	22	41	1.91
424735--424804	6	12.5	6	95	4	105	34	48	17	0	1.47
426876--426971	35	2.6	36	85	9	124	46	8	1	43	1.40
426889--427337	35	12.6	35	72	17	266	43	6	4	45	1.51
426935--427000	29	2.3	29	91	0	105	42	4	4	48	1.44
426966--427337	76	5.1	73	77	14	324	42	6	5	45	1.52
427606--427656	6	8.5	6	95	0	93	0	15	49	35	1.45
427778--427841	20	3.2	20	68	4	65	40	23	18	17	1.91
427729--427841	41	2.8	41	85	9	151	38	21	17	22	1.93
428158--428196	2	19.5	2	100	0	78	51	0	0	48	1.00
434812--434871	31	1.9	31	89	0	93	40	5	10	45	1.60
434935--435008	22	3.2	22	70	16	60	55	17	0	27	1.42
434979--435175	32	6.7	32	75	17	210	53	12	0	32	1.43
435043--435085	22	2.0	22	95	0	77	48	13	2	34	1.56
435011--435188	54	3.2	54	82	6	248	53	11	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434895--435139	86	2.9	80	84	11	330	53	13	0	32	1.43
435367--435511	30	4.5	30	85	10	137	49	4	0	45	1.23
435393--435526	15	8.5	15	82	11	169	50	2	0	47	1.13
435422--435526	30	3.5	30	97	0	192	49	0	0	50	1.00
448238--448289	21	2.3	24	83	9	74	17	40	21	21	1.91
455248--455279	15	2.1	15	100	0	64	31	12	12	43	1.80
456046--456083	20	1.9	20	88	0	58	63	2	2	31	1.22
461432--461493	20	3.1	20	100	0	124	38	16	25	19	1.92
464116--464244	20	6.3	20	72	9	100	41	18	20	18	1.90
464133--464208	21	3.7	20	80	3	89	42	18	23	15	1.89
464116--464208	41	2.3	41	98	0	177	40	18	23	17	1.90
464135--464269	41	3.3	41	81	6	132	39	20	20	19	1.93
464239--464291	20	2.7	20	93	0	88	28	28	18	24	1.98
464479--464522	22	2.0	22	95	0	79	20	45	15	18	1.85
464786--464823	20	1.9	20	88	0	58	13	15	21	50	1.78
466143--466187	18	2.5	18	88	0	72	26	44	15	13	1.83
466660--466726	20	3.4	20	81	2	73	38	23	22	14	1.92
466715--466772	14	3.9	14	75	16	62	48	25	17	8	1.75
466699--466789	32	2.8	33	91	3	157	47	23	18	10	1.80
466806--466863	14	3.9	14	75	16	62	6	17	27	48	1.72
466801--466879	32	2.4	33	93	2	133	8	18	25	46	1.78
466852--466918	19	3.5	19	83	4	89	14	23	23	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466864--466918	20	2.8	19	89	5	83	16	25	23	34	1.95
468926--468979	14	3.5	14	77	22	63	48	20	20	11	1.80
468907--468984	33	2.4	33	93	0	129	42	20	23	14	1.88
469005--469078	39	1.9	38	86	2	103	17	22	22	36	1.95
469005--469078	19	3.8	19	90	1	103	17	22	22	36	1.95
470138--470191	24	2.2	24	90	0	81	24	16	20	38	1.92
470366--470390	12	2.1	12	100	0	50	72	0	28	0	0.86
472683--472832	19	8.7	19	69	20	123	44	18	22	15	1.87
472683--472804	33	3.7	33	86	4	183	43	18	22	15	1.88
472828--472870	20	2.2	20	87	4	61	16	18	23	41	1.89
472856--472889	14	2.4	14	85	0	50	8	23	20	47	1.78
474390--474456	21	3.2	21	68	4	55	19	20	35	23	1.95
474390--474512	42	2.9	41	80	7	113	22	17	36	22	1.95
476531--476629	33	3.0	33	87	1	144	39	25	24	11	1.88
476506--476651	19	8.1	19	73	17	114	42	21	23	12	1.87
476647--476713	19	3.5	19	85	2	89	10	16	25	47	1.78
477232--477283	20	2.6	20	90	0	77	26	19	26	26	1.99
477245--477325	20	4.0	20	74	3	63	24	17	22	35	1.95
477251--477328	41	1.9	41	83	0	102	23	16	20	39	1.92
477294--477386	41	2.3	41	83	7	118	20	24	18	36	1.95
477314--477386	21	3.5	21	79	3	94	19	26	16	38	1.92
480491--480523	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480665--480825	73	2.4	65	81	12	175	31	21	18	29	1.96
480690--480996	73	4.2	72	74	12	306	32	17	21	27	1.96
488291--488380	31	2.9	31	88	0	126	17	13	15	53	1.73
488771--488809	15	2.4	17	83	16	64	25	5	10	58	1.51
488778--488810	15	2.2	15	100	0	66	27	6	9	57	1.53
494657--494743	43	2.0	43	93	0	147	39	13	24	22	1.91
497179--497242	33	1.9	34	93	3	112	50	21	9	18	1.75
498352--498394	18	2.3	18	92	4	68	30	11	16	41	1.83
500146--500381	82	2.9	81	77	4	258	31	16	19	32	1.94
501799--501856	20	2.6	22	86	10	75	31	18	22	27	1.97
503360--503409	6	8.3	6	100	0	100	32	0	18	50	1.47
503453--503513	23	2.7	23	89	0	104	16	26	27	29	1.97
506809--506866	20	2.6	22	84	10	66	31	20	22	25	1.98
508424--508468	23	2.0	23	81	0	54	20	24	24	31	1.98
511862--511894	17	1.9	17	100	0	66	27	6	48	18	1.71
511865--511903	17	2.3	17	86	8	53	33	7	43	15	1.75
513429--513470	21	2.0	21	95	0	75	30	4	40	23	1.75
515894--515956	32	2.0	32	82	11	78	15	6	14	63	1.49
517362--517447	39	2.2	37	76	10	84	47	8	10	33	1.67
525880--526002	61	2.1	59	90	6	194	43	32	8	15	1.78
525880--526002	28	4.1	28	78	19	108	43	32	8	15	1.78
525871--526013	33	4.6	32	82	12	156	42	33	9	13	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525959--526030	32	2.2	32	80	4	83	44	29	9	16	1.80
526477--526517	16	2.6	16	100	0	82	68	4	4	21	1.28

Tables:   1   2   3

The End!