Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007766.1 Hibiscus syriacus cultivar Beakdansim tig00110038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  442891

Tables:   1   2   3   

This is table  3  of  3  ( 260 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
394159--395246
553
2.0
551
90
1
1743
31
18
15
33
1.93
398925--398962
18
2.1
18
90
0
58
21
10
36
31
1.87
404340--404392
26
2.0
26
100
0
106
11
18
39
30
1.86
408145--408193
20
2.4
22
77
19
61
36
0
2
61
1.08
408167--408204
16
2.4
16
78
4
51
44
0
0
55
0.99
414302--414327
3
8.7
3
100
0
52
0
0
34
65
0.93
414808--414842
18
1.9
18
88
0
52
68
2
0
28
1.04
415854--415908
28
2.0
29
86
10
80
49
5
1
43
1.36
416134--416172
12
3.0
13
85
7
53
48
0
2
48
1.15
416138--416172
13
2.8
12
87
12
52
51
0
2
45
1.16
416426--416461
17
2.1
18
89
5
56
16
27
0
55
1.42
416670--416802
32
4.2
32
75
3
108
27
18
16
38
1.92
417271--417341
32
2.2
32
89
0
106
25
15
16
42
1.88
416738--417797
541
2.0
536
87
3
1529
33
18
13
35
1.89
421323--421356
13
2.6
13
90
9
52
47
5
17
29
1.71
421829--421890
23
2.8
22
82
4
81
27
22
29
20
1.99
425951--425991
21
2.0
21
86
13
59
34
7
2
56
1.40
434326--434375
2
25.5
2
95
4
93
50
0
0
50
1.00
440622--440688
13
5.2
13
77
0
53
29
22
19
28
1.98
440623--440688
26
2.5
26
80
0
78
30
22
18
28
1.97

Tables:   1   2   3

The End!