genome.fa.s7769.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007769.1 Hibiscus syriacus cultivar Beakdansim tig00110045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  634091

Tables:   1   2   3   

This is table  1  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1399--1429	15	2.1	15	93	0	53	54	3	12	29	1.53
1792--1909	39	3.4	32	84	13	130	11	9	36	42	1.74
8627--8652	12	2.2	12	100	0	52	15	0	7	76	0.99
9005--9074	36	1.9	36	94	0	122	24	12	10	52	1.69
14937--15096	64	2.5	63	83	5	180	34	19	20	26	1.96
15773--15836	30	2.1	30	88	0	92	20	18	26	34	1.96
19145--19305	64	2.5	64	84	4	200	34	19	19	26	1.96
19982--20045	30	2.1	30	85	0	83	18	18	28	34	1.95
23731--23755	12	2.1	12	100	0	50	20	16	24	40	1.91
26567--26611	22	2.0	24	86	8	67	46	17	2	33	1.61
31147--31191	22	2.0	24	86	8	67	46	17	2	33	1.61
31671--31721	15	3.4	15	91	0	84	9	68	15	5	1.36
37615--37640	8	3.2	8	100	0	52	38	0	0	61	0.96
39582--39621	9	4.4	9	83	0	53	27	0	47	25	1.52
46487--46564	39	2.0	39	97	2	149	47	16	17	17	1.83
54046--54074	2	14.5	2	100	0	58	48	0	0	51	1.00
67810--67866	15	3.7	15	81	9	78	21	35	28	15	1.94
67810--67878	15	4.3	16	78	10	61	21	33	27	17	1.96
67810--67878	32	2.2	32	94	0	120	21	33	27	17	1.96
69176--69219	9	4.8	9	86	5	52	18	22	29	29	1.97
69176--69211	19	1.9	19	88	5	56	19	22	27	30	1.98
69222--69259	13	2.9	13	92	0	67	15	47	21	15	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69223--69283	31	2.0	31	83	6	79	19	42	19	18	1.89
69374--69475	29	3.5	28	81	6	96	34	4	22	38	1.76
71470--71508	2	19.5	2	100	0	78	51	0	0	48	1.00
77193--77226	3	11.3	3	100	0	68	32	0	0	67	0.91
85286--85364	33	2.5	33	81	6	83	41	3	2	51	1.33
85299--85364	11	6.2	11	72	13	66	40	3	1	54	1.25
86104--86148	7	6.4	7	100	0	90	44	0	55	0	0.99
86178--86203	3	8.7	3	100	0	52	30	0	0	69	0.89
90916--90992	31	2.5	31	86	0	109	18	12	16	51	1.75
93210--93411	30	6.8	29	75	12	171	56	8	14	20	1.64
94693--94732	16	2.5	16	95	0	71	15	32	30	22	1.94
96998--97073	36	2.1	36	85	7	100	47	1	3	47	1.29
99701--100148	228	2.0	227	94	1	790	44	8	7	39	1.62
100210--100259	20	2.4	21	83	9	68	58	14	12	16	1.64
100380--100425	19	2.4	19	88	3	74	54	10	17	17	1.70
102641--102705	21	3.1	21	80	6	69	40	15	29	15	1.88
102739--102804	33	2.0	33	90	0	105	28	0	48	22	1.51
104581--104628	19	2.6	19	93	3	80	31	2	10	56	1.45
104747--105907	198	5.9	199	96	2	2069	37	15	15	31	1.89
104747--105907	395	2.9	396	95	2	2092	37	15	15	31	1.89
107362--107429	21	3.4	18	69	21	55	36	8	35	19	1.83
107362--107459	6	16.3	6	80	0	70	36	7	34	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107377--107463	3	29.0	3	77	0	84	35	5	34	24	1.79
107365--107455	42	2.2	42	91	0	146	35	7	35	21	1.83
107362--107459	18	5.4	18	78	0	88	36	7	34	21	1.81
108920--109627	183	3.9	184	96	1	1253	36	13	16	33	1.89
108920--109627	365	1.9	365	95	0	1265	36	13	16	33	1.89
112077--112136	25	2.4	25	91	0	93	33	6	15	45	1.72
112424--112487	23	2.8	23	87	0	92	35	6	20	37	1.78
112424--112496	23	3.2	23	82	7	85	34	5	20	39	1.76
113404--113444	21	2.0	21	90	0	64	48	0	7	43	1.30
114124--114190	29	2.3	28	92	2	107	49	4	8	37	1.55
114577--114603	13	2.1	13	100	0	54	29	7	22	40	1.81
117083--117116	10	3.3	10	91	4	50	29	0	0	70	0.87
121160--121207	20	2.4	20	85	0	69	14	10	39	35	1.80
126680--126828	72	2.1	72	85	0	199	19	18	28	33	1.95
127065--127090	2	13.0	2	100	0	52	50	0	0	50	1.00
133921--133978	20	2.8	20	82	5	71	22	24	18	34	1.96
134508--134558	20	2.5	20	90	0	75	50	21	13	13	1.76
134530--134612	33	2.5	33	84	2	103	45	21	18	14	1.84
134642--134718	20	3.9	20	76	6	68	16	22	15	45	1.85
136411--136972	94	6.1	94	94	1	949	21	12	18	46	1.82
137063--137164	20	5.2	19	89	3	78	50	21	20	7	1.73
137089--137165	20	3.9	20	94	1	129	49	27	16	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137171--137330	19	8.8	19	71	15	124	11	21	20	46	1.82
137174--137306	33	3.8	33	86	7	176	10	22	21	45	1.82
137174--137330	33	4.3	37	84	8	159	11	21	20	46	1.82
137731--137819	42	2.1	42	80	0	106	21	37	16	24	1.94
139139--139175	14	2.6	14	88	12	58	32	0	18	48	1.49
139172--139260	36	2.5	36	98	1	171	25	6	16	50	1.70
139318--139405	19	5.2	19	67	25	79	46	18	21	13	1.83
139318--139430	33	3.4	33	92	0	181	47	20	20	11	1.80
139436--139553	19	6.7	19	66	19	76	12	23	20	43	1.86
139440--139533	33	2.8	33	96	0	170	11	24	19	44	1.84
139527--139599	20	3.6	20	68	17	60	24	17	24	32	1.97
142177--142237	30	2.0	30	90	6	97	42	11	4	40	1.62
144228--144274	23	2.1	23	84	4	60	36	2	4	57	1.30
144639--144722	21	3.9	21	72	14	64	14	25	36	23	1.92
148522--148561	21	1.9	21	85	10	55	35	10	2	52	1.48
150774--150834	30	2.0	30	90	6	97	42	11	4	40	1.62
151535--151561	14	1.9	14	100	0	54	7	11	29	51	1.64
151777--151828	24	2.2	24	82	0	59	36	21	19	23	1.95
152667--152716	20	2.5	20	93	0	82	24	18	18	40	1.91
153420--153533	59	1.9	60	89	1	176	36	12	14	35	1.84
167454--167605	74	2.1	74	100	0	304	50	19	14	15	1.79
168591--168620	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169202--169246	23	2.0	23	86	0	63	48	0	0	51	1.00
171673--171705	11	2.9	12	86	13	52	42	0	0	57	0.98
171673--171712	10	3.6	11	86	10	55	42	0	0	57	0.98
171649--171708	26	2.3	25	77	5	66	43	0	0	56	0.99
172207--172276	21	3.4	21	80	9	81	40	12	8	38	1.74
174056--174393	147	2.3	147	92	3	547	30	13	14	41	1.84
175422--175454	14	2.4	14	100	0	66	42	6	0	51	1.26
176198--176232	16	2.2	16	100	0	70	22	14	34	28	1.93
178167--178200	2	17.0	2	100	0	68	50	0	50	0	1.00
188383--188425	2	21.5	2	100	0	86	48	0	0	51	1.00
193477--193512	18	2.0	18	100	0	72	44	11	16	27	1.82
194486--194512	4	6.8	4	100	0	54	22	0	0	77	0.76
195513--195552	21	1.9	21	100	0	80	52	10	12	25	1.70
195771--195845	27	2.8	27	97	0	141	20	16	53	10	1.72
195853--195915	15	4.4	15	64	11	51	14	25	41	19	1.89
195900--195951	21	2.5	21	93	0	86	15	13	53	17	1.72
195975--196108	36	3.7	36	92	0	232	20	7	55	17	1.65
196870--196912	6	7.2	6	83	0	50	16	6	62	13	1.51
196870--196917	18	2.7	18	83	6	53	14	10	62	12	1.54
196890--197105	42	5.2	42	88	5	314	19	6	59	14	1.57
202258--202319	31	2.0	31	93	0	106	22	16	37	24	1.94
202326--202368	22	2.0	22	100	0	86	23	23	37	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202413--202500	29	3.0	29	81	0	104	20	30	32	15	1.94
203444--203563	42	2.9	42	92	0	204	16	18	19	45	1.85
203817--203885	24	2.8	25	85	10	74	44	0	1	53	1.09
203814--203908	25	3.6	25	81	17	97	45	0	1	53	1.07
203911--203955	23	2.0	23	86	0	63	53	2	2	42	1.25
204259--204292	14	2.4	14	90	0	50	38	17	8	35	1.81
204301--204343	14	2.9	15	75	6	52	30	16	6	46	1.73
206901--206953	2	26.5	2	100	0	106	49	0	0	50	1.00
207147--207299	59	2.6	60	85	2	200	32	21	15	30	1.95
207784--207825	18	2.4	18	88	4	59	42	4	7	45	1.52

Tables:   1   2   3