genome.fa.s7769.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007769.1 Hibiscus syriacus cultivar Beakdansim tig00110045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  634091

Tables:   1   2   3   

This is table  3  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467088--467170	25	3.3	26	77	19	86	39	3	2	54	1.31
470199--470247	22	2.2	23	78	10	57	69	4	12	14	1.33
470404--470451	20	2.5	19	90	6	78	58	14	4	22	1.54
478642--478684	23	1.9	23	85	4	61	69	6	11	11	1.35
478849--478896	20	2.5	19	90	6	78	58	14	4	22	1.54
479892--480010	2	60.0	2	84	1	114	38	0	10	50	1.38
482786--482866	23	3.2	23	83	13	81	59	1	1	38	1.13
482786--482866	28	3.2	25	78	16	78	59	1	1	38	1.13
482815--482869	28	2.0	28	89	7	85	61	0	1	36	1.06
482808--482921	13	8.6	14	76	16	93	55	0	3	41	1.17
482826--482990	68	2.4	67	84	7	217	50	0	3	45	1.21
487214--487398	94	2.0	95	92	1	309	34	11	18	35	1.87
489847--489946	49	2.0	49	90	0	155	43	13	4	40	1.62
493036--493060	2	12.5	2	100	0	50	52	0	0	48	1.00
496221--496342	45	2.8	45	84	13	148	48	0	0	50	1.06
496315--496416	27	3.8	26	73	17	75	47	0	2	49	1.23
496354--496491	24	6.0	23	70	18	83	48	1	1	48	1.19
496401--496481	22	3.6	23	75	20	71	50	2	0	46	1.14
496467--496537	29	2.4	31	81	13	87	47	1	1	49	1.18
496535--496572	20	2.0	20	89	5	60	57	0	0	42	0.98
496554--496616	23	2.7	23	78	9	65	47	0	4	47	1.23
496698--496730	13	2.5	14	85	14	52	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497591--497617	14	1.9	14	100	0	54	37	7	14	40	1.74
500644--500682	19	2.1	19	85	9	53	56	2	0	41	1.13
506055--506084	13	2.2	14	94	5	53	60	0	30	10	1.30
514617--514649	14	2.3	15	94	5	59	12	0	21	66	1.23
517628--517711	29	2.9	29	98	0	159	30	14	14	40	1.85
522338--522448	29	3.8	28	91	5	168	30	16	14	38	1.88
527721--527773	20	2.6	21	76	5	56	45	24	15	15	1.84
527805--527842	20	1.9	20	88	0	58	47	15	15	21	1.82
527897--528016	41	2.9	41	93	1	204	29	15	25	29	1.96
527897--528012	20	5.7	20	69	15	85	30	16	26	26	1.97
527916--528026	21	5.4	21	68	12	86	27	18	25	29	1.98
528334--528444	20	5.6	20	74	12	95	43	19	18	18	1.89
528349--528444	40	2.4	40	91	0	165	43	18	16	20	1.88
528585--528654	20	3.5	20	94	0	122	17	21	20	41	1.90
529116--529179	29	2.2	28	78	10	67	45	12	20	21	1.84
532742--532807	17	3.6	19	74	15	68	40	0	0	59	0.98
532737--532797	18	3.3	19	79	9	56	42	0	0	57	0.98
533022--533070	16	3.1	16	90	0	80	16	6	28	48	1.69
533047--533095	22	2.2	22	88	0	71	10	8	28	53	1.63
533025--533076	16	3.2	16	82	12	54	15	3	28	51	1.60
536544--536604	20	2.9	21	87	7	79	18	26	34	21	1.96
544045--544144	22	4.5	22	88	0	146	31	31	23	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544045--544144	44	2.3	44	92	0	173	31	31	23	15	1.95
548935--549035	22	4.6	22	88	0	139	31	31	23	12	1.92
552651--552706	26	2.2	25	78	9	60	53	5	5	35	1.47
553010--553042	17	1.9	17	100	0	66	9	24	0	66	1.20
554125--554165	2	20.5	2	100	0	82	51	0	0	48	1.00
569995--570036	2	21.0	2	100	0	84	50	0	0	50	1.00
574370--574400	14	2.2	14	100	0	62	51	19	0	29	1.47
576407--576557	20	7.6	20	69	15	82	33	25	15	25	1.95
577445--577503	24	2.5	24	91	0	91	27	18	16	37	1.93
595973--596056	44	1.9	44	90	0	132	36	3	32	27	1.74
603014--603239	110	2.1	110	93	0	398	23	31	7	37	1.83
608261--608309	15	3.2	15	77	11	55	40	0	0	59	0.98
608541--608627	46	1.9	44	81	9	104	48	3	2	45	1.32
608585--608622	19	2.0	20	94	5	69	52	0	0	47	1.00
608881--608927	22	2.2	22	88	3	69	55	2	2	40	1.24
610183--610220	13	2.9	13	84	7	51	36	2	0	60	1.11
610185--610214	10	3.0	10	95	0	51	40	3	0	56	1.16
610736--610765	16	1.9	16	93	6	53	80	3	16	0	0.85
612814--612857	23	1.9	23	86	9	63	47	2	4	45	1.35
624594--624902	135	2.3	129	82	8	354	27	29	18	24	1.98
624825--624928	40	2.5	40	78	4	109	25	31	16	26	1.96
625658--625688	16	1.9	16	93	0	53	80	3	16	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627738--627781	23	1.9	23	86	9	63	47	2	4	45	1.35

Tables:   1   2   3

The End!