genome.fa.s7769.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007769.1 Hibiscus syriacus cultivar Beakdansim tig00110045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  634091

Tables:   1   2   3   

This is table  2  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208814--208865	20	2.6	21	87	6	72	30	23	7	38	1.83
210601--210640	2	20.0	2	100	0	80	50	0	0	50	1.00
212348--212412	19	3.4	19	97	0	121	9	26	43	21	1.82
213376--213531	78	2.0	78	98	0	303	42	2	16	38	1.61
214471--214518	22	2.1	22	92	3	78	37	4	12	45	1.61
217757--217819	31	2.0	31	90	0	99	34	6	28	30	1.82
225083--225147	30	2.2	30	94	0	112	26	13	21	38	1.91
225110--225307	105	1.9	105	82	6	249	27	20	20	32	1.97
225363--227252	159	11.9	159	95	0	3296	24	18	25	31	1.98
227727--227831	37	2.8	37	80	0	129	40	13	9	36	1.77
228245--228290	14	3.4	14	77	22	53	28	0	0	71	0.86
228245--228290	22	2.0	23	88	12	69	28	0	0	71	0.86
228300--228346	25	2.0	23	83	8	58	34	4	0	61	1.15
228417--228465	19	2.9	17	82	14	57	26	2	2	69	1.10
233185--233226	22	2.0	21	81	13	50	76	4	14	4	1.12
233304--233630	167	1.9	168	88	9	495	36	19	18	25	1.94
234025--234123	22	4.5	22	93	0	162	39	26	14	20	1.90
234927--236619	106	16.0	106	91	1	2531	33	24	18	23	1.96
238050--238099	19	2.9	17	82	11	57	26	2	2	70	1.09
242551--242601	23	2.2	23	85	0	66	54	1	1	41	1.22
242664--242726	23	2.5	27	80	14	82	52	0	1	46	1.10
242724--242768	23	2.0	23	86	0	63	53	2	2	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247139--247181	20	2.2	20	86	0	59	30	13	20	34	1.92
249294--249357	18	3.6	18	68	16	51	7	7	25	59	1.52
251360--251391	16	2.0	16	93	0	55	40	18	0	40	1.51
252368--252455	3	29.3	3	100	0	176	32	0	0	67	0.91
253288--253356	31	2.4	27	77	17	68	44	4	4	46	1.43
253384--253659	22	12.6	22	94	0	464	49	10	0	39	1.40
253646--253685	12	3.6	12	83	16	59	55	0	0	45	0.99
254368--254448	30	2.7	30	80	10	94	38	9	8	43	1.69
256327--256444	21	5.7	21	70	6	71	34	26	17	21	1.95
256432--256640	20	10.4	20	82	5	226	36	26	17	19	1.94
257333--257379	24	2.0	24	87	8	69	25	14	21	38	1.92
257554--257578	12	2.1	12	100	0	50	72	0	28	0	0.86
259877--260228	19	19.7	19	81	15	439	45	17	22	14	1.84
259863--260228	124	2.9	126	82	11	486	45	17	22	14	1.84
259905--260203	52	5.6	52	95	3	517	46	16	22	14	1.83
260199--260314	53	2.2	52	87	3	169	18	23	18	39	1.92
260218--260334	53	2.2	53	98	1	227	13	23	17	44	1.85
260237--260334	19	5.4	19	84	13	143	14	22	17	45	1.84
260441--260477	14	2.6	14	91	0	65	45	21	0	32	1.52
262398--262571	19	9.6	19	76	13	143	45	22	20	10	1.82
262398--262502	39	2.7	39	78	12	117	46	25	18	9	1.79
262493--262549	14	3.7	14	75	20	51	43	22	22	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262474--262566	33	2.8	33	93	0	159	46	20	21	11	1.82
262567--262658	19	5.4	18	72	24	83	7	17	28	46	1.75
262583--262641	14	3.9	14	76	20	64	6	16	28	47	1.72
262567--262690	33	3.7	33	91	1	185	8	17	27	45	1.78
262616--262672	14	3.7	14	72	20	51	8	22	24	43	1.81
262788--263102	93	3.4	93	98	0	614	45	19	13	22	1.85
264784--264848	21	3.1	21	75	4	78	47	13	24	13	1.80
264825--264908	33	2.5	33	96	0	159	46	17	23	11	1.82
264784--264911	19	7.1	19	68	21	78	45	17	24	12	1.83
264833--264889	14	3.7	14	72	20	51	43	21	24	10	1.83
264923--264979	14	3.7	14	75	20	60	10	24	21	43	1.83
264907--264986	33	2.4	33	93	0	133	10	21	21	47	1.79
264967--265040	21	3.5	21	83	7	105	13	21	16	48	1.80
265120--265190	33	2.2	33	94	0	124	47	16	23	11	1.79
265572--265764	20	9.6	20	83	5	228	18	18	27	35	1.94
266758--266797	20	2.0	21	85	5	55	55	5	2	37	1.35
268940--268966	7	3.9	7	100	0	54	0	29	29	40	1.57
277338--277503	82	2.0	82	90	0	260	26	20	35	17	1.95
290036--290101	32	2.1	32	100	0	132	21	22	9	46	1.79
304178--304218	18	2.3	18	91	4	66	63	2	4	29	1.28
307373--307454	24	3.4	24	75	8	69	69	2	6	21	1.22
307422--307456	16	2.1	17	89	5	54	74	0	2	22	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307638--307682	21	2.1	22	95	4	83	20	48	13	17	1.80
308665--308935	83	3.2	82	86	3	382	21	19	26	31	1.97
308937--308994	28	2.1	28	90	6	91	34	8	15	41	1.78
308972--309030	28	2.0	30	90	6	95	30	11	18	38	1.87
309487--310774	106	12.4	105	90	4	1940	23	18	24	34	1.96
309775--310774	211	4.8	211	94	2	1655	22	18	24	34	1.96
314470--314519	17	3.0	17	80	13	52	76	0	4	20	0.95
314706--314751	22	2.1	22	100	0	92	19	50	13	17	1.78
318720--318803	43	2.0	43	92	4	143	39	8	17	34	1.80
319492--319523	2	16.0	2	100	0	64	0	50	0	50	1.00
322695--322772	30	2.6	30	81	0	93	41	28	23	7	1.82
353189--353248	25	2.4	25	100	0	120	53	28	8	10	1.63
355349--355376	2	14.0	2	100	0	56	50	0	0	50	1.00
358128--358166	17	2.4	17	95	4	71	51	5	0	43	1.24
358226--358250	11	2.3	11	100	0	50	24	0	32	44	1.54
362388--362448	16	3.8	16	95	0	113	55	22	13	8	1.64
370355--370388	10	3.4	10	100	0	68	20	41	8	29	1.82
371079--371115	20	1.9	19	89	10	58	18	21	10	48	1.78
371085--371122	20	1.9	20	88	0	58	21	23	10	44	1.83
373813--373902	39	2.3	39	98	0	171	41	7	36	14	1.75
374358--374401	23	1.9	23	90	0	70	47	0	4	47	1.22
374357--374416	23	2.5	24	81	8	68	50	0	6	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374845--374981	46	2.8	50	79	10	167	48	15	10	24	1.77
390778--390810	15	2.2	15	94	0	57	54	0	0	45	0.99
392235--392271	17	2.2	17	95	0	65	40	18	24	16	1.90
392506--392565	28	2.1	28	96	0	111	43	6	23	26	1.78
393879--393938	31	1.9	31	93	0	102	31	25	15	28	1.95
395389--395465	20	3.8	20	82	3	91	32	23	20	23	1.98
395388--395465	41	1.9	41	86	5	113	32	24	20	23	1.98
395729--395794	34	1.9	34	96	0	123	42	15	7	34	1.75
403420--403464	23	2.0	23	86	0	63	48	24	11	15	1.77
403429--403474	23	2.0	23	86	0	65	47	28	8	15	1.74
421641--421688	18	2.7	18	96	0	87	4	25	22	47	1.69
424029--424387	196	1.8	195	88	5	521	39	14	11	33	1.83
424761--424829	35	2.0	35	86	11	97	36	40	15	7	1.76
424831--424901	30	2.3	30	97	2	133	42	26	9	21	1.84
425694--425731	16	2.4	16	100	0	76	31	31	0	36	1.58
431308--431334	2	13.5	2	100	0	54	48	0	0	51	1.00
435071--435101	16	1.9	16	93	0	53	9	12	3	74	1.19
438244--438366	38	3.3	38	91	4	205	39	38	9	13	1.77
438541--438634	38	2.5	38	84	8	138	40	39	9	10	1.73
438278--438852	263	2.2	259	91	4	922	36	29	12	21	1.90
438579--439036	220	2.1	222	92	2	749	35	27	12	24	1.91
444413--444468	25	2.2	25	93	0	94	35	23	3	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447284--447346	23	2.7	22	77	22	58	34	3	0	61	1.12
447284--447346	24	2.8	22	77	13	65	34	3	0	61	1.12
450929--450983	2	27.5	2	100	0	110	49	0	0	50	1.00
453657--453967	152	2.0	152	98	0	604	35	18	15	30	1.92
456703--456765	27	2.3	27	73	10	65	11	12	26	49	1.74
456791--456880	29	3.1	29	90	1	128	52	24	6	16	1.68
459219--459520	151	2.0	151	98	0	586	34	23	13	29	1.92
463714--463747	18	1.9	18	88	5	52	38	11	5	44	1.65
465641--465683	23	1.9	22	90	4	68	23	0	4	72	1.04
467088--467153	23	2.8	22	82	13	78	40	4	1	53	1.31

Tables:   1   2   3