genome.fa.s7799.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007799.1 Hibiscus syriacus cultivar Beakdansim tig00110109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1433344

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196785--196828	15	2.8	16	82	3	63	50	11	9	29	1.69
197215--197369	59	2.6	59	85	7	190	34	21	4	38	1.74
197215--197373	60	2.7	58	85	6	196	35	21	4	38	1.73
197541--197703	59	2.7	59	75	12	172	43	4	21	30	1.73
203406--203440	3	11.7	3	100	0	70	0	31	0	68	0.90
214310--214353	13	3.4	13	100	0	88	15	47	15	20	1.82
214331--214371	18	2.3	18	91	0	64	14	51	21	12	1.75
214310--214394	13	6.0	13	75	17	71	14	44	21	20	1.86
214310--214394	31	3.0	26	75	18	71	14	44	21	20	1.86
214353--214400	8	6.5	8	81	18	68	12	39	27	20	1.89
217048--217154	52	2.1	52	87	3	153	33	23	5	37	1.78
217932--217960	2	14.5	2	100	0	58	48	0	0	51	1.00
219618--219651	2	17.0	2	100	0	68	50	0	0	50	1.00
220200--220241	7	6.0	7	83	8	50	45	0	2	52	1.13
220200--220241	14	3.0	14	86	10	59	45	0	2	52	1.13
230131--230178	17	2.9	17	75	6	55	60	0	0	39	0.97
230003--230238	117	2.0	118	96	0	438	49	4	11	34	1.59
230576--230989	204	2.0	204	96	0	765	18	16	16	48	1.81
232250--232293	22	2.0	22	95	0	79	40	18	6	34	1.77
235934--236203	135	2.0	135	93	0	459	32	17	16	33	1.92
240800--241204	135	3.0	135	97	0	738	32	17	15	34	1.91
255986--256010	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261018--261078	30	2.0	30	87	6	88	3	59	0	37	1.14
261032--261087	14	3.9	14	74	19	53	1	58	0	39	1.08
261038--261114	38	2.0	40	85	10	106	2	55	1	40	1.22
261851--261881	15	2.0	16	93	6	55	22	12	32	32	1.92
267494--267552	10	5.7	10	73	15	57	57	20	11	10	1.63
267498--267546	16	3.1	16	93	0	89	57	22	12	8	1.61
268295--268324	14	2.1	14	93	0	51	56	20	13	10	1.65
268288--268336	24	2.0	24	92	0	80	53	20	14	12	1.73
269723--269832	21	5.3	21	67	4	89	20	19	25	34	1.96
269744--270021	41	6.8	41	91	1	366	15	19	24	39	1.91
269741--269895	20	7.6	20	66	9	89	16	20	24	38	1.92
269950--270018	20	3.4	20	66	18	61	13	20	24	42	1.87
270961--271178	20	10.6	20	68	16	142	40	23	21	14	1.90
270958--271155	41	4.8	41	90	3	299	39	24	20	15	1.91
272655--272699	22	2.0	22	82	4	54	42	2	8	46	1.47
276451--276498	23	2.1	23	84	3	62	25	2	14	58	1.48
279006--279120	50	2.3	50	82	5	135	33	13	8	44	1.75
281190--281216	13	2.1	13	100	0	54	51	7	25	14	1.68
286286--286341	28	2.0	28	82	10	69	39	5	1	53	1.34
288916--288971	20	2.8	20	83	0	67	37	0	10	51	1.37
289538--289583	23	2.1	22	92	8	76	45	4	17	32	1.68
290194--290375	60	3.1	59	79	8	183	37	4	21	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292783--292826	2	22.0	2	100	0	88	50	0	0	50	1.00
293062--293090	12	2.4	12	100	0	58	79	0	6	13	0.93
299558--299681	57	2.2	56	91	4	205	19	25	12	42	1.86
301723--302151	145	3.0	143	92	4	689	21	9	22	47	1.79
305495--305561	24	2.6	25	73	22	66	49	1	5	43	1.36
305447--305622	62	2.9	61	74	17	145	47	0	5	46	1.30
305520--305616	31	3.2	30	72	15	83	46	1	5	47	1.31
306989--307024	18	2.0	18	88	0	54	61	0	0	38	0.96
307557--307613	28	2.0	28	83	6	71	33	26	12	28	1.92
307763--307887	60	2.1	60	82	5	146	34	11	16	38	1.84
309212--309275	30	2.1	30	94	0	110	23	20	10	45	1.82
309270--309307	18	2.1	18	100	0	76	31	10	5	52	1.58
311489--311519	2	15.5	2	100	0	62	51	0	0	48	1.00
314141--314165	2	12.5	2	100	0	50	52	0	0	48	1.00
315364--315408	4	11.2	4	100	0	90	24	0	26	48	1.51
322769--322827	31	1.9	31	89	0	91	49	13	11	25	1.76
324014--324046	14	2.4	14	94	0	57	33	6	30	30	1.82
334451--334497	20	2.3	20	92	0	76	44	21	17	17	1.86
334516--334557	20	2.1	20	95	0	75	28	16	16	38	1.91
334536--334658	57	2.2	57	93	0	210	31	16	18	33	1.93
334700--334789	20	4.4	20	79	9	85	30	25	13	31	1.94
334700--334788	41	2.2	41	78	15	96	30	25	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334769--335066	57	5.3	57	80	10	373	35	20	15	28	1.93
335041--335094	20	2.7	20	97	0	99	27	22	16	33	1.95
336596--336628	6	5.5	6	96	0	57	0	18	18	63	1.31
347586--347630	22	2.0	22	91	0	72	35	15	20	28	1.93
349915--350020	51	2.1	51	100	0	212	48	20	12	18	1.80
359566--359724	60	2.7	60	92	2	248	35	12	20	32	1.90
359753--359810	24	2.4	24	80	5	64	10	27	36	25	1.89
361688--361713	2	13.0	2	100	0	52	0	50	0	50	1.00
371433--371460	4	7.0	4	100	0	56	50	25	0	25	1.50
375858--375926	32	2.2	32	83	0	84	34	20	11	33	1.89
378234--378621	186	2.1	182	89	3	600	44	8	3	43	1.51
381105--381180	37	2.0	38	92	2	127	35	7	5	51	1.54
382856--382896	16	2.6	16	88	3	57	34	19	9	36	1.85
390879--390915	18	2.1	18	90	10	58	21	2	2	72	1.09
391339--391387	18	2.6	19	87	12	66	24	2	0	73	0.94
391355--391396	20	2.1	20	90	0	66	38	0	0	61	0.96
398145--398184	3	13.3	3	100	0	80	67	0	0	32	0.91
400951--401524	290	2.0	289	94	0	995	38	18	17	25	1.92
404717--404796	30	2.6	30	84	4	88	21	13	13	51	1.76
406067--406115	25	2.0	25	84	8	64	34	10	0	55	1.34
413471--413537	28	2.4	27	85	4	107	13	7	34	44	1.72
414127--414172	18	2.7	18	86	6	60	28	26	6	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418310--418334	12	2.1	12	100	0	50	84	0	0	16	0.63
418758--418803	21	2.2	21	96	0	83	30	13	19	36	1.90
428288--428505	109	2.0	112	87	3	316	38	20	12	28	1.90
439978--440003	12	2.2	12	100	0	52	50	0	7	42	1.31
442367--442393	4	6.8	4	100	0	54	25	25	0	48	1.52
445268--445322	3	18.3	3	100	0	110	67	0	0	32	0.91
454211--454270	27	2.2	27	93	0	102	15	8	36	40	1.77
456717--456814	31	3.3	31	66	18	89	34	11	14	39	1.81
467329--467482	78	2.0	77	87	1	218	33	20	17	29	1.95
467707--467793	28	3.1	28	73	12	79	48	2	1	48	1.21
475028--475078	23	2.2	23	82	0	57	15	13	11	58	1.63
475602--475671	3	23.3	3	100	0	140	32	0	0	67	0.91
481948--482157	104	2.0	105	92	6	356	40	19	12	26	1.88
484300--484340	18	2.3	18	91	4	66	29	4	2	63	1.28
485822--486103	141	2.0	141	100	0	564	21	24	26	28	1.99
490388--490547	60	2.7	60	83	2	178	33	21	5	40	1.75
491223--491270	24	2.0	24	100	0	96	29	8	12	50	1.69
495444--495477	16	2.1	16	88	0	50	50	0	2	47	1.16
495513--495549	15	2.4	16	86	13	51	32	2	5	59	1.34
495736--495798	24	2.6	24	92	5	101	47	4	3	44	1.40
496037--496284	130	1.9	130	93	0	424	35	12	15	36	1.86
496680--496755	35	2.2	35	92	0	125	35	1	23	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507547--507576	12	2.5	12	100	0	60	46	16	30	6	1.73
520405--520482	2	39.5	2	97	2	149	51	0	0	48	1.00
529204--529256	23	2.3	23	86	0	70	33	11	15	39	1.83
532798--532832	16	2.2	16	89	0	52	5	11	2	80	1.00
532889--532945	2	28.5	2	100	0	114	49	0	0	50	1.00
535411--535464	22	2.3	24	90	6	85	27	29	25	16	1.97
537531--537591	19	3.3	19	70	9	63	4	11	31	52	1.58
539357--539419	21	3.0	22	70	15	69	34	26	19	19	1.95
539925--539949	6	4.2	6	100	0	50	32	0	32	36	1.58
547359--547397	8	5.2	8	82	17	57	33	0	0	66	0.92

Tables:   1   2   3   4   5   6