genome.fa.s7799.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007799.1 Hibiscus syriacus cultivar Beakdansim tig00110109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1433344

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1332826--1332882	20	2.8	20	76	15	62	47	0	0	52	1.00
1333641--1333760	42	2.9	42	92	0	195	17	20	16	45	1.85
1333950--1334032	22	3.9	22	80	10	77	49	0	0	50	1.00
1333950--1334029	43	1.9	39	82	9	97	48	0	0	51	1.00
1333988--1334025	18	2.1	19	95	5	69	44	0	0	55	0.99
1334001--1334084	28	3.0	28	80	13	102	48	1	1	48	1.16
1334282--1334331	20	2.5	20	93	0	91	34	14	10	42	1.78
1334314--1334393	15	5.4	15	78	3	81	35	15	6	43	1.71
1334314--1334393	30	2.7	30	80	1	99	35	15	6	43	1.71
1338899--1338950	28	1.9	27	84	7	70	44	5	15	34	1.70
1338942--1338980	19	2.1	19	100	0	78	38	0	30	30	1.58
1345750--1345801	22	2.5	20	81	12	59	55	0	3	40	1.18
1346154--1346178	6	4.2	6	100	0	50	16	0	0	84	0.63
1346477--1346521	23	1.9	24	90	4	74	28	15	2	53	1.54
1347062--1347128	28	2.4	28	87	0	98	41	22	5	29	1.77
1351402--1351426	2	12.5	2	100	0	50	52	0	0	48	1.00
1354903--1355008	38	2.8	37	91	4	167	16	10	34	38	1.82
1358932--1358958	14	1.9	14	100	0	54	29	7	14	48	1.71
1359297--1359330	14	2.4	14	90	0	50	58	20	14	5	1.57
1359294--1359407	24	4.8	24	74	10	108	58	18	11	11	1.61
1359311--1359376	34	1.9	34	90	0	105	57	21	13	7	1.61
1359569--1359601	14	2.4	14	90	10	50	60	9	15	15	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1359583--1359644	24	2.6	24	86	0	79	58	12	11	17	1.63
1362439--1362513	29	2.6	29	89	0	105	17	29	32	21	1.96
1362826--1362876	26	2.0	26	84	3	68	45	13	35	5	1.68
1363032--1363120	41	2.2	41	78	8	92	42	1	10	46	1.45
1363060--1363191	45	3.0	45	80	14	134	40	0	12	47	1.41
1363354--1363400	16	3.0	16	84	9	53	29	0	10	59	1.31
1363375--1363405	15	2.1	14	94	5	53	38	0	6	54	1.26
1365554--1365586	17	1.9	17	93	0	57	45	12	6	36	1.66
1365571--1365639	22	3.0	22	73	19	77	47	7	4	40	1.51
1365768--1365864	38	2.6	38	80	7	103	48	5	3	43	1.40
1365794--1366129	14	24.9	13	72	20	148	45	9	2	42	1.49
1365794--1366126	26	13.4	26	71	13	218	45	9	2	42	1.49
1365810--1366126	124	2.6	123	93	1	530	45	9	2	42	1.48
1365955--1366178	98	2.3	99	93	2	380	44	9	2	43	1.51
1366045--1366185	26	5.9	23	73	11	61	44	7	2	45	1.44
1369036--1369074	15	2.5	16	87	4	53	43	0	7	48	1.31
1369791--1369903	50	2.4	47	80	15	128	49	7	0	41	1.38
1369863--1369925	28	2.2	30	91	5	103	57	11	0	31	1.34
1369867--1369932	28	2.4	28	85	10	98	56	10	0	33	1.34
1369902--1369950	21	2.3	21	85	3	71	53	16	0	30	1.43
1370319--1370390	21	3.3	21	70	21	67	29	26	27	16	1.97
1370315--1370405	44	2.1	44	97	0	173	28	27	25	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370333--1370405	23	3.3	23	70	14	80	27	28	26	17	1.98
1370503--1370540	20	1.9	20	94	0	67	21	50	13	15	1.78
1374704--1374786	42	2.0	42	92	0	139	21	1	16	60	1.43
1379008--1379034	2	13.5	2	100	0	54	48	0	0	51	1.00
1379670--1379725	25	2.3	25	78	9	62	17	5	7	69	1.31
1382063--1382099	14	2.8	14	88	8	51	37	0	0	62	0.96
1401135--1401169	2	17.5	2	100	0	70	48	0	0	51	1.00
1404770--1404819	23	2.2	23	100	0	100	28	12	18	42	1.85
1405738--1405763	2	13.0	2	100	0	52	50	0	0	50	1.00
1409005--1409061	28	2.0	28	96	0	105	14	1	8	75	1.11
1420470--1420561	45	2.1	44	97	2	175	28	26	8	36	1.86
1432876--1432918	2	21.5	2	95	0	77	48	2	0	48	1.14
1433105--1433140	16	2.3	15	90	4	54	44	5	2	47	1.41

Tables:   1   2   3   4   5   6

The End!