genome.fa.s7804.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007804.1 Hibiscus syriacus cultivar Beakdansim tig00110122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1697051

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1034 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1597163--1597230	21	3.2	21	85	8	86	77	0	20	1	0.84
1597177--1597239	14	4.5	15	82	15	55	79	0	19	1	0.82
1597177--1597243	21	3.4	19	84	12	73	77	0	20	1	0.85
1597177--1597241	27	2.4	26	82	12	69	80	0	18	1	0.80
1597297--1597362	7	9.6	7	88	6	64	0	21	0	78	0.75
1597306--1597375	15	4.7	15	85	5	72	1	21	0	77	0.85
1597314--1597369	22	2.5	22	91	5	87	0	25	0	75	0.81
1597314--1597369	7	7.7	7	92	6	85	0	25	0	75	0.81
1597832--1597870	17	2.3	17	100	0	78	28	5	25	41	1.77
1601001--1601034	2	17.0	2	87	0	50	44	0	5	50	1.26
1602564--1602588	2	12.5	2	100	0	50	48	0	0	52	1.00
1602995--1603024	10	3.0	10	95	0	51	26	0	0	73	0.84
1603047--1603105	9	5.9	10	83	13	77	16	1	0	81	0.78
1603047--1603105	14	3.9	15	85	12	77	16	1	0	81	0.78
1603045--1603131	9	9.0	9	79	10	66	17	3	1	78	0.96
1603047--1603105	5	11.8	5	85	10	77	16	1	0	81	0.78
1603078--1603114	15	2.5	15	86	0	56	16	2	0	81	0.81
1604971--1605015	19	2.4	19	92	3	74	11	11	11	66	1.45
1608216--1609119	106	8.5	106	94	0	1558	33	24	17	23	1.96
1609066--1609168	44	2.3	44	98	0	197	31	25	19	24	1.98
1610915--1610973	24	2.5	24	84	13	70	15	3	0	81	0.82
1610921--1610998	13	6.1	12	76	20	61	17	2	1	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1610921--1610989	13	5.2	13	80	16	63	17	2	0	79	0.85
1610923--1610996	8	9.3	7	77	20	58	17	2	1	78	0.94
1610934--1610989	16	3.5	15	80	9	67	17	1	0	80	0.80
1611619--1611999	186	2.0	186	98	0	744	35	12	14	37	1.84
1615765--1615840	36	2.1	36	97	0	143	31	10	14	43	1.79
1616264--1616293	15	2.0	15	100	0	60	13	26	46	13	1.80
1620771--1620846	36	2.1	36	97	0	143	31	10	14	43	1.79
1626159--1626205	13	3.6	13	97	0	85	42	6	14	36	1.72
1626668--1626743	23	3.6	21	79	10	75	26	17	30	26	1.97
1630550--1630600	21	2.5	20	77	3	57	33	7	1	56	1.39
1634415--1634457	22	2.0	22	90	0	68	20	6	23	48	1.73
1634437--1634535	43	2.3	43	85	5	137	32	11	21	35	1.88
1634470--1634713	43	5.7	42	77	7	181	23	16	24	35	1.95
1634547--1634712	42	3.9	42	84	3	199	21	19	25	33	1.97
1634547--1634712	84	2.0	85	84	8	223	21	19	25	33	1.97
1635120--1635170	21	2.4	21	90	0	75	3	31	19	45	1.69
1644530--1644608	41	1.9	41	86	0	113	31	20	22	25	1.98
1651619--1651653	13	2.7	13	91	8	54	77	5	17	0	0.96
1658841--1658967	59	2.2	59	95	0	227	27	24	16	31	1.96
1670954--1671118	42	4.0	41	81	8	151	34	20	16	28	1.94
1670964--1671140	41	4.3	40	80	9	171	34	19	16	29	1.94
1670964--1671140	83	2.2	81	81	8	198	34	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1675870--1675921	20	2.6	20	96	0	95	38	26	13	21	1.90
1675911--1676009	21	4.8	20	72	6	72	36	23	19	21	1.95
1675976--1676169	20	9.6	20	81	5	221	35	25	19	19	1.95
1675976--1676169	60	3.2	60	83	0	253	35	25	19	19	1.95
1676546--1676616	33	2.2	33	92	0	115	11	22	18	47	1.80
1676737--1676805	31	2.2	32	86	5	95	42	26	23	8	1.83
1676801--1676898	19	5.7	19	70	22	81	10	24	22	42	1.84
1676823--1676912	14	5.7	14	74	23	81	8	25	23	42	1.83
1676806--1676920	33	3.5	33	95	0	212	9	24	20	45	1.81
1678599--1678977	185	2.1	183	96	2	715	22	12	18	46	1.83
1678599--1678975	93	4.1	93	97	1	717	22	12	18	46	1.83
1679019--1679147	19	7.3	19	75	17	125	45	28	17	8	1.77
1679055--1679147	33	2.8	32	91	4	150	46	27	18	7	1.76
1679019--1679147	52	2.5	52	74	14	140	45	28	17	8	1.77
1679143--1679276	19	7.6	19	75	18	128	10	19	24	45	1.81
1679165--1679221	14	3.7	14	77	20	60	8	21	24	45	1.80
1679148--1679276	33	3.8	33	89	5	177	10	18	24	46	1.80
1681082--1681152	37	1.9	37	97	0	133	29	1	16	52	1.53
1681134--1681169	14	2.6	14	95	0	63	33	0	22	44	1.53
1681275--1681376	19	5.6	19	84	13	151	44	17	23	14	1.86
1681405--1681797	19	22.4	19	80	16	476	14	20	17	47	1.82
1681383--1681797	52	7.9	49	83	10	375	14	20	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1681424--1681797	33	10.8	33	80	15	363	14	20	17	47	1.82
1684282--1684327	23	2.0	23	86	4	65	39	21	13	26	1.90
1684997--1685405	20	20.5	20	85	5	486	20	18	25	35	1.95
1691079--1691191	21	5.4	21	78	2	102	43	17	37	1	1.60
1691066--1691150	42	2.0	42	81	4	100	44	15	36	3	1.63
1691506--1691621	43	2.7	43	79	10	114	31	20	21	25	1.98
1691611--1691714	43	2.4	43	80	3	120	34	27	11	25	1.91
1691730--1691988	43	6.1	43	74	8	190	30	22	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9

The End!