genome.fa.s7824.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007824.1 Hibiscus syriacus cultivar Beakdansim tig00110162_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  895964

Tables:   1   2   3   4   

This is table  1  of  4  ( 464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5227--5285	10	6.2	10	73	23	56	15	30	28	25	1.96
5226--5280	19	2.8	19	81	13	76	16	29	29	25	1.97
5222--5280	29	2.0	29	90	6	93	15	28	27	28	1.96
5282--5320	17	2.3	17	95	0	69	17	43	23	15	1.87
5310--5340	7	4.4	7	91	0	53	19	29	25	25	1.99
11927--11991	10	7.0	9	77	16	53	20	21	24	33	1.97
12017--12068	22	2.4	23	87	9	74	19	46	25	9	1.80
12038--12075	17	2.2	17	95	0	67	18	44	23	13	1.85
17114--17155	14	2.9	14	82	13	50	59	7	9	23	1.53
18061--18167	29	3.6	30	82	13	116	16	27	26	29	1.97
18063--18212	19	7.7	19	76	16	114	14	26	30	29	1.95
18062--18218	29	5.4	29	77	10	92	15	26	28	28	1.96
18062--18174	39	2.9	39	93	6	187	15	27	27	29	1.96
18062--18214	39	4.0	38	88	7	170	15	26	29	29	1.96
18216--18267	5	9.6	5	76	15	50	19	51	21	7	1.71
18237--18274	17	2.2	17	100	0	76	18	47	23	10	1.79
18216--18281	22	2.9	22	93	4	105	18	46	22	12	1.81
18264--18294	7	4.4	7	91	0	53	19	29	25	25	1.99
27019--27059	8	5.2	8	82	5	57	34	0	29	36	1.58
27130--27757	128	4.9	128	98	0	1195	23	25	19	32	1.98
28178--28260	40	2.0	41	86	6	116	33	0	3	62	1.12
28208--28232	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28783--28876	21	4.5	21	88	5	111	21	26	34	18	1.96
28880--28927	21	2.3	21	85	0	60	22	12	39	25	1.89
30652--30726	30	2.4	31	84	4	89	61	1	0	37	1.05
30653--30724	34	2.2	33	78	16	78	62	1	0	36	1.04
30681--30756	33	2.3	34	80	14	88	64	5	0	30	1.15
33759--33817	26	2.4	24	78	10	66	66	1	0	32	1.02
34900--34939	17	2.2	20	86	13	59	25	0	2	72	0.97
37004--37034	12	2.6	12	94	0	53	41	9	12	35	1.76
39081--39123	18	2.3	18	84	4	50	44	6	13	34	1.72
42172--42203	13	2.5	13	100	0	64	56	0	0	43	0.99
42404--42443	16	2.5	15	80	11	53	50	0	2	47	1.14
45635--45672	20	1.9	20	94	0	67	31	23	21	23	1.98
49660--50097	73	5.9	75	73	12	255	43	7	3	45	1.49
49726--49785	12	5.0	12	72	11	52	41	6	6	45	1.57
49681--50103	36	11.3	38	79	11	357	42	8	3	45	1.50
50086--50122	2	18.0	2	94	5	65	48	2	0	48	1.15
58040--58392	175	2.0	175	100	0	706	19	21	19	40	1.92
62577--62637	21	2.9	21	100	0	122	19	24	37	18	1.94
67493--67533	16	2.6	16	88	3	57	34	21	7	36	1.82
68406--68443	16	2.4	16	95	0	67	42	28	10	18	1.83
73382--73536	84	1.8	85	88	1	240	22	18	12	46	1.83
92642--92673	17	1.9	16	93	6	55	75	9	0	15	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92971--92996	12	2.2	12	100	0	52	19	15	15	50	1.79
107803--107843	21	2.0	21	95	0	73	17	24	17	41	1.89
107804--107850	21	2.2	21	88	0	67	21	23	19	36	1.95
107840--107933	20	4.7	20	78	2	107	41	21	18	19	1.90
108129--108194	22	3.0	21	80	8	78	24	36	15	24	1.93
108527--108571	20	2.2	20	88	0	63	15	13	17	53	1.73
110274--110314	21	1.9	21	85	5	55	26	14	14	43	1.84
110434--110566	20	7.3	20	73	22	96	41	22	18	17	1.90
110457--110537	33	2.4	33	83	2	99	45	23	19	11	1.82
110437--110602	87	1.9	87	91	0	269	43	21	19	16	1.88
110615--110703	20	4.4	20	94	0	151	17	20	24	37	1.94
111183--111290	21	5.1	21	72	7	85	20	36	19	24	1.95
111184--111292	42	2.6	42	77	8	123	20	36	19	23	1.95
112673--112708	14	2.6	14	90	0	54	30	0	22	47	1.52
112810--112862	20	2.7	20	93	0	97	33	24	24	16	1.96
112891--112986	33	2.9	34	87	3	140	14	22	19	42	1.88
112958--113051	20	4.7	20	86	2	136	19	21	24	35	1.96
116321--116387	20	3.3	20	93	0	107	25	19	23	31	1.98
116381--116527	20	7.3	20	86	3	206	21	20	19	38	1.93
116361--116527	40	4.2	38	84	8	165	22	20	19	37	1.94
116354--116527	60	2.9	58	81	9	206	22	20	19	37	1.94
116524--116564	21	2.0	21	95	0	73	41	17	24	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118598--118627	6	5.0	6	100	0	60	16	50	16	16	1.79
120487--120512	2	13.0	2	100	0	52	50	0	0	50	1.00
120793--120894	32	3.2	31	75	8	98	47	5	6	40	1.55
126359--126385	2	13.5	2	100	0	54	51	0	0	48	1.00
126554--126653	24	4.2	24	75	5	94	47	17	15	21	1.83
126547--126655	48	2.3	48	77	0	119	48	16	14	20	1.81
129129--129205	18	4.6	18	81	15	110	11	20	50	16	1.76
129123--129201	31	2.5	31	95	0	149	13	21	48	16	1.81
129123--129183	13	4.3	13	77	18	68	14	21	47	16	1.82
133967--134026	23	2.6	23	81	0	66	45	5	15	35	1.68
133861--134120	87	3.0	87	89	0	403	43	10	13	33	1.77
134055--134104	23	2.2	23	88	0	73	38	10	18	34	1.84
134055--134111	23	2.5	23	82	0	60	42	8	15	33	1.78
134498--134708	23	9.4	23	71	12	116	35	15	8	40	1.77
134464--134672	110	1.9	110	88	0	319	33	13	9	43	1.77
134602--134697	46	2.1	46	90	0	147	33	15	7	43	1.74
135581--135625	24	2.0	22	82	8	54	0	51	6	42	1.28
147110--147211	22	4.8	22	83	9	131	17	22	30	29	1.97
147113--147190	40	2.0	40	92	0	129	17	20	32	29	1.96
148342--148381	21	1.9	21	90	10	64	55	5	7	32	1.50
152209--152265	23	2.5	23	94	2	98	22	29	22	24	1.99
154536--154594	23	2.7	23	89	5	86	37	0	37	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155100--155174	21	3.6	21	98	0	141	28	25	26	20	1.99
164133--164166	2	17.0	2	100	0	68	50	0	50	0	1.00
164431--164472	20	2.1	20	95	0	75	35	7	14	42	1.73
173067--173122	28	2.0	28	100	0	112	14	25	10	50	1.75
177035--177075	16	2.6	16	84	3	57	36	9	34	19	1.85
179917--179960	21	2.1	21	86	0	61	47	27	0	25	1.52
185635--185780	42	3.5	42	82	4	154	36	16	17	29	1.91
186035--186206	41	4.2	41	77	8	145	27	20	18	32	1.96
192803--192828	13	2.0	13	100	0	52	15	7	23	53	1.67
197067--197162	42	2.3	41	85	1	129	23	23	23	28	2.00
197291--197665	80	4.7	80	75	8	348	30	18	21	30	1.97
197455--197574	42	2.9	42	94	1	206	25	20	24	30	1.99
197455--197553	22	4.8	20	70	19	78	25	21	24	29	1.99
197370--197699	163	2.0	163	88	1	491	28	18	21	30	1.97
197491--197709	122	1.8	120	86	2	321	27	19	21	31	1.97
197620--197705	42	2.1	40	86	4	118	25	17	22	34	1.95
197619--197693	20	3.6	21	67	13	55	26	17	21	34	1.95
198077--198436	53	6.8	53	83	2	409	29	18	26	24	1.98
206642--206673	16	2.0	17	88	11	50	31	0	3	65	1.08
210990--211035	22	2.1	22	88	8	67	58	0	2	39	1.10
212652--212735	44	2.0	43	86	11	122	45	0	7	47	1.30
212673--212774	14	7.3	14	75	24	99	45	0	8	46	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212694--212775	26	3.2	26	94	5	141	45	0	9	45	1.36
212652--212735	11	8.1	10	73	20	66	45	0	7	47	1.30
214225--214255	14	2.1	15	94	5	55	70	0	3	25	1.02
214579--214684	24	4.3	24	70	13	90	42	8	2	46	1.49
214641--214684	11	3.8	12	82	14	56	45	6	2	45	1.42
214941--215036	14	6.7	14	80	12	106	42	13	0	43	1.44
214935--215001	13	5.1	13	83	7	82	40	11	0	47	1.40
214941--215036	27	3.4	27	82	12	120	42	13	0	43	1.44
222272--222321	25	2.0	25	88	7	75	62	4	4	30	1.32
222264--222307	21	2.2	20	84	12	54	63	6	2	27	1.31

Tables:   1   2   3   4