genome.fa.s7833.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007833.1 Hibiscus syriacus cultivar Beakdansim tig00110177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  816380

Tables:   1   2   3   4   

This is table  2  of  4  ( 409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229348--229394	2	24.0	2	81	12	53	51	2	4	42	1.33
229390--229463	14	5.4	14	69	21	50	70	0	2	27	1.01
229359--229409	25	2.0	27	84	7	70	58	0	3	37	1.16
229386--229448	21	3.4	17	77	16	54	71	0	3	25	1.01
229392--229447	21	2.6	21	81	18	71	73	0	3	23	0.99
236329--236425	42	2.3	42	85	1	133	22	24	20	31	1.98
236482--236564	34	2.4	34	91	0	148	25	15	20	38	1.92
236534--237007	90	5.3	90	89	1	689	27	16	20	35	1.94
236894--237298	177	2.3	177	90	1	650	30	14	20	34	1.93
237300--237362	20	3.0	22	65	9	58	25	17	23	33	1.96
237281--237362	42	2.0	42	90	0	128	26	18	21	32	1.97
237584--237819	105	2.2	105	91	0	382	40	16	18	24	1.91
240206--240234	14	2.0	15	93	6	51	44	0	0	55	0.99
240835--241215	2	191.5	2	68	14	191	49	4	3	42	1.39
240826--241133	13	23.0	13	73	16	163	49	5	3	41	1.42
240994--241215	11	20.6	11	64	25	66	49	4	4	42	1.42
241009--241215	9	22.0	9	65	22	54	48	4	3	42	1.41
241046--241133	31	2.8	31	92	0	149	46	5	4	43	1.47
241098--241237	54	2.5	54	78	12	140	50	4	2	42	1.37
241146--241215	35	1.9	35	82	5	86	51	2	1	44	1.25
241221--241353	56	2.4	57	90	2	198	45	7	6	40	1.57
241522--241576	2	27.0	2	78	10	58	45	5	3	45	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241710--241757	21	2.3	21	88	0	69	41	6	6	45	1.54
241768--241818	15	3.3	15	71	15	50	41	3	3	50	1.39
241797--241929	36	3.9	36	77	11	143	42	3	7	47	1.47
241894--241927	15	2.2	16	89	5	52	44	2	5	47	1.42
248080--248119	21	1.9	21	89	0	62	25	40	25	10	1.86
251549--251784	29	7.8	31	69	18	108	45	4	2	47	1.35
251708--251763	6	10.0	6	78	21	52	48	0	0	51	1.00
251603--251767	44	3.8	44	69	16	135	46	3	2	48	1.30
251802--251840	20	2.0	20	100	0	78	46	0	2	51	1.14
252562--252637	30	2.5	30	84	0	98	40	38	11	9	1.74
252622--252761	12	11.9	12	74	7	99	49	41	2	7	1.42
252622--252700	23	3.4	24	78	5	72	51	36	2	8	1.47
252679--252759	6	13.7	6	89	2	128	49	46	1	2	1.23
256825--256885	22	2.8	22	92	0	104	31	19	24	24	1.98
257596--257635	21	1.9	21	94	0	71	32	15	27	25	1.95
257671--257729	22	2.7	22	91	0	100	22	18	16	42	1.89
258337--258472	60	2.3	60	81	7	161	39	12	12	35	1.81
260839--260885	20	2.3	20	85	0	58	42	10	4	42	1.59
263945--264005	22	2.8	22	79	0	77	36	14	21	27	1.93
265700--265966	133	2.0	133	100	0	534	28	14	14	42	1.85
266003--266048	20	2.3	20	100	0	92	13	23	13	50	1.76
269984--270118	58	2.3	58	84	0	180	22	8	23	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269984--270094	29	3.8	29	93	0	177	20	9	24	45	1.82
281608--281647	8	5.2	8	85	11	57	85	0	12	2	0.71
281608--281647	14	2.7	14	84	7	53	85	0	12	2	0.71
281633--281699	27	2.4	27	85	11	84	64	4	17	13	1.44
285838--285885	23	2.1	23	100	0	96	8	12	18	60	1.57
287907--287953	20	2.3	20	85	7	60	44	10	2	42	1.51
291024--291084	22	2.8	22	92	0	104	31	19	24	24	1.98
291029--291098	22	3.1	22	81	6	79	31	20	20	28	1.97
291870--291902	12	2.8	12	90	9	50	24	24	15	36	1.93
292532--292667	60	2.3	60	79	7	152	38	12	13	35	1.82
301636--301686	23	2.3	22	86	6	68	1	3	11	82	0.89
303866--303912	20	2.3	20	85	7	60	44	10	2	42	1.51
304666--304793	66	1.9	66	96	0	238	29	17	20	32	1.95
306765--306789	13	1.9	13	100	0	50	64	0	16	20	1.30
307016--307071	22	2.5	22	91	8	96	35	17	23	23	1.95
308937--308984	20	2.4	20	100	0	96	12	22	16	47	1.80
320041--320070	12	2.5	12	94	0	51	30	10	10	50	1.69
325607--325645	18	2.2	18	86	9	53	25	2	12	58	1.47
326041--326070	12	2.5	12	94	0	51	30	10	10	50	1.69
332063--332093	12	2.6	12	94	0	53	32	9	9	48	1.69
336883--336981	24	4.2	24	63	12	60	55	0	18	26	1.42
336902--337010	19	4.9	19	67	27	56	58	0	17	23	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336849--337008	71	2.2	71	97	1	302	57	0	18	24	1.40
336908--337017	24	4.6	24	67	15	75	60	0	17	22	1.37
339072--339118	20	2.3	20	85	7	60	44	10	2	42	1.51
340039--340074	3	12.3	3	94	5	65	66	0	0	33	0.92
340662--340782	60	2.0	60	83	3	154	44	9	10	34	1.73
340684--340797	60	1.9	60	83	0	147	43	11	10	34	1.75
354833--354862	12	2.5	12	94	0	51	30	10	10	50	1.69
359549--359618	28	2.5	29	75	11	74	62	4	20	12	1.46
365492--365528	6	6.5	6	90	9	60	16	0	0	83	0.64
365492--365528	11	3.3	11	92	7	65	16	0	0	83	0.64
365492--365528	17	2.2	18	90	9	60	16	0	0	83	0.64
366699--366741	12	3.5	12	90	3	68	88	2	9	0	0.60
366699--366738	6	6.7	6	86	8	55	87	2	10	0	0.63
366699--366750	12	4.2	12	85	14	63	84	3	11	0	0.74
366699--366750	24	2.2	24	86	6	70	84	3	11	0	0.74
366730--366796	28	2.4	28	78	7	75	62	4	19	13	1.47
367835--367864	12	2.5	12	94	0	51	30	10	10	50	1.69
373090--373136	20	2.3	20	85	7	60	44	10	2	42	1.51
374659--374779	60	2.0	60	83	3	154	43	10	11	33	1.76
374681--374794	60	1.9	60	83	3	149	42	11	12	33	1.78
381368--381415	20	2.4	20	96	0	87	12	20	16	50	1.78
384830--385007	95	1.9	95	85	0	248	32	24	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404488--404529	16	2.5	18	85	11	54	69	7	0	23	1.13
404530--404569	19	2.1	19	85	0	53	57	7	2	32	1.40
404507--404692	79	2.3	84	87	7	276	63	8	2	25	1.34
405099--405139	21	2.0	21	85	0	55	26	14	26	31	1.95
405171--405227	21	2.7	21	86	0	78	22	15	28	33	1.95
406910--406952	15	2.7	16	85	10	61	58	0	4	37	1.19
410134--410204	3	24.3	3	94	5	128	64	0	0	35	0.94
410519--411088	113	5.0	113	89	1	858	29	18	13	38	1.89
410533--411088	227	2.5	225	90	2	891	29	19	12	38	1.89
413115--413144	7	4.4	7	95	4	53	0	10	0	90	0.47
423735--423771	15	2.7	15	88	12	53	62	8	5	24	1.44
425960--426032	12	6.5	11	81	13	71	63	0	1	35	1.04
425960--426023	3	21.3	3	90	0	101	64	0	1	34	1.03
431291--431365	37	2.0	37	97	0	141	20	16	8	56	1.65
431311--431366	17	3.1	17	68	22	51	17	19	7	55	1.65
436350--437067	199	3.6	197	84	4	867	31	15	13	39	1.86
440219--441158	201	4.8	200	84	9	1275	34	15	11	37	1.85
440611--441158	188	3.0	184	80	9	677	33	15	12	38	1.85
440576--441129	180	3.0	180	81	9	724	33	16	12	37	1.86
444200--444242	21	2.0	21	90	0	68	37	16	16	30	1.91
444216--445345	200	5.7	199	85	2	1491	31	15	15	37	1.89
444221--445394	400	2.9	400	89	2	1756	31	15	15	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444216--445345	601	1.9	600	85	3	1592	31	15	15	37	1.89
445725--445770	19	2.4	19	88	0	65	54	8	2	34	1.43
447335--447373	18	2.2	18	95	0	69	2	41	0	56	1.13
448230--448283	26	2.1	26	96	0	99	35	31	5	27	1.80
448505--448898	182	2.2	182	90	2	603	30	15	12	41	1.84
451029--451082	21	2.6	21	71	11	56	33	24	18	24	1.97
451075--451127	20	2.7	20	88	11	74	45	24	16	13	1.83
451173--451327	20	7.7	20	70	15	104	39	21	18	20	1.93
451136--451327	60	3.1	61	78	9	185	39	22	17	20	1.93
451136--451347	40	5.2	41	85	1	257	39	22	16	21	1.92

Tables:   1   2   3   4