Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007833.1 Hibiscus syriacus cultivar Beakdansim tig00110177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  816380

Tables:   1   2   3   4   

This is table  4  of  4  ( 409 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
624925--624980
20
3.2
16
71
28
51
26
3
1
67
1.16
624925--624998
37
2.0
36
84
2
94
27
2
4
66
1.23
625813--625850
13
2.9
14
84
11
53
26
0
0
73
0.83
625791--625841
17
2.8
17
76
21
50
25
3
0
70
1.04
631052--631107
16
3.6
16
81
9
55
76
0
19
3
0.93
631052--631107
15
3.7
15
79
11
53
76
0
19
3
0.93
631065--631113
8
6.4
8
75
17
50
75
0
22
2
0.90
635944--636020
22
3.5
22
85
0
118
36
10
11
41
1.76
636865--637505
76
8.5
76
95
1
1126
23
19
22
34
1.96
636865--637505
151
4.2
152
94
1
1126
23
19
22
34
1.96
637626--637668
19
2.1
19
87
12
59
48
0
0
51
1.00
637626--637696
22
3.1
22
84
10
72
49
0
0
50
1.00
639040--639095
20
3.2
16
71
28
51
26
3
1
67
1.16
640146--640718
200
2.9
199
85
4
758
39
13
13
33
1.83
640509--640554
20
2.2
21
85
11
60
28
17
13
41
1.86
646008--646038
15
2.1
15
100
0
62
6
45
12
35
1.68
646326--646382
29
2.0
29
100
0
114
42
14
10
33
1.79
680794--680836
20
2.0
22
86
8
63
2
16
2
79
0.95
686506--686569
33
2.0
32
96
3
119
25
6
37
31
1.81
687563--687663
47
2.1
47
90
0
157
37
24
14
22
1.92
687725--687822
47
2.1
47
92
0
160
34
25
15
24
1.94
687566--687884
159
2.0
160
98
0
622
35
23
13
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
700011--700436
234
1.8
227
83
5
559
32
21
19
26
1.97
704678--704905
116
2.0
113
80
10
250
44
7
8
39
1.64
715339--715567
121
1.9
119
81
6
273
45
8
7
37
1.64
715668--715705
3
12.7
3
94
0
67
65
0
2
31
1.06
716997--717043
3
15.7
3
82
8
60
63
0
0
36
0.94
717241--717586
124
2.8
123
85
4
459
25
17
15
42
1.87
718165--718204
6
6.7
6
85
0
53
52
7
15
25
1.68
718165--718204
12
3.3
12
100
0
80
52
7
15
25
1.68
719824--719881
28
2.2
26
84
6
71
58
0
8
32
1.28
720374--720607
121
1.9
119
82
7
285
45
8
8
38
1.64
720701--720732
3
10.7
3
93
0
55
65
0
3
31
1.08
722068--722132
3
21.7
3
81
12
80
64
0
0
35
0.94
722080--722132
24
2.2
24
96
0
97
67
0
0
32
0.91
724492--724532
21
2.0
21
85
0
55
34
12
12
41
1.80
729356--729522
83
2.0
83
94
0
289
34
15
15
34
1.89
737007--737114
30
3.6
30
79
9
96
61
25
10
2
1.42
737024--737114
30
3.0
31
79
6
98
60
28
8
2
1.38
739281--739356
34
2.2
33
88
4
107
15
22
15
46
1.84
740157--740232
34
2.2
33
88
4
107
15
22
15
46
1.84
738621--740374
876
2.0
876
100
0
3508
25
15
24
35
1.94
766810--766938
68
1.9
68
88
0
195
44
13
6
34
1.72
771216--771353
28
4.9
28
98
0
267
29
16
13
39
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
776643--776682
21
1.9
21
89
0
62
15
27
25
32
1.95
781111--781155
15
2.9
16
83
6
56
68
0
2
28
1.01
796015--796057
19
2.3
19
84
8
52
34
9
0
55
1.32
812046--812096
21
2.4
21
78
12
59
29
5
3
60
1.38
812047--812094
22
2.2
22
85
7
62
27
4
4
64
1.30

Tables:   1   2   3   4

The End!