genome.fa.s7837.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007837.1 Hibiscus syriacus cultivar Beakdansim tig00110186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1003650

Tables:   1   2   3   4   

This is table  2  of  4  ( 457 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171797--172812	325	3.2	322	86	3	1388	38	17	15	28	1.90
174108--174958	317	2.7	316	90	2	1299	38	17	16	27	1.91
174934--175008	23	3.3	23	94	0	132	44	21	21	13	1.86
174610--175328	370	1.9	370	86	4	1022	39	17	16	26	1.91
180511--180550	19	2.1	19	95	0	71	27	32	22	17	1.96
180509--180598	9	9.3	9	71	13	54	30	26	26	16	1.97
180515--180599	10	8.7	10	74	12	70	30	27	24	17	1.97
183026--183104	40	2.0	38	83	9	97	55	1	3	39	1.26
183033--183118	39	2.2	39	83	8	104	58	2	2	37	1.24
183061--183103	13	3.1	14	90	6	61	58	0	2	39	1.11
183045--183123	39	2.0	40	85	7	108	56	2	2	37	1.26
183143--183196	23	2.3	24	93	3	92	40	0	11	48	1.39
183419--183487	25	2.6	28	76	17	76	47	2	1	47	1.25
183491--183677	31	5.8	30	69	18	108	49	3	4	42	1.40
183498--183544	24	1.9	25	82	4	60	55	4	2	38	1.31
183541--183644	21	4.8	21	73	16	86	45	1	4	48	1.35
183503--183713	66	3.2	64	75	12	185	48	3	4	43	1.42
183562--183626	15	4.2	16	79	11	57	44	1	6	47	1.37
183449--183713	133	2.0	132	81	8	315	47	3	4	44	1.40
183660--183762	22	4.8	22	77	11	97	49	7	4	37	1.53
183689--183741	21	2.5	20	79	8	61	49	3	5	41	1.44
183496--183745	133	1.9	131	79	11	285	48	4	5	42	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183689--183746	14	4.1	14	80	4	55	48	3	6	41	1.47
183781--183887	20	5.2	21	78	16	109	43	5	6	43	1.53
183786--183853	24	3.0	24	83	10	81	47	2	7	42	1.46
183784--183880	41	2.4	39	80	13	97	44	3	7	45	1.47
183784--183933	63	2.4	64	82	8	166	42	6	8	44	1.58
183867--183943	37	2.1	36	83	4	102	38	9	9	42	1.68
183912--183946	16	2.1	17	94	5	63	40	11	5	42	1.65
184050--184109	7	8.6	7	84	0	84	18	0	36	45	1.50
184050--184105	21	2.7	21	94	0	94	19	0	37	42	1.52
186436--186499	19	3.5	17	82	10	65	40	4	4	50	1.44
186455--186500	20	2.3	20	92	3	76	41	8	2	47	1.46
186524--186549	7	3.7	7	100	0	52	15	0	38	46	1.46
186523--186576	14	3.8	14	77	2	54	24	3	29	42	1.72
186566--186636	33	2.2	33	100	0	142	23	2	35	38	1.70
186699--186754	2	28.5	2	76	16	55	46	5	1	46	1.36
186806--186862	13	4.2	13	80	8	69	43	7	5	43	1.54
186812--186858	15	3.3	15	76	11	53	44	6	4	44	1.49
186805--186858	28	2.0	27	85	7	74	42	5	5	46	1.50
194329--194375	24	2.0	24	91	0	76	44	6	2	46	1.40
206867--206907	2	20.5	2	100	0	82	0	48	0	51	1.00
209991--210033	20	2.2	19	83	4	50	30	0	2	67	1.03
210000--210046	19	2.4	20	92	3	78	23	2	4	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215884--216417	4	133.5	4	99	0	1052	25	0	24	49	1.50
221236--221297	27	2.4	25	87	12	83	38	16	17	27	1.91
225608--225638	14	2.2	14	100	0	62	19	35	16	29	1.93
228635--228673	2	19.5	2	100	0	78	48	0	0	51	1.00
228994--229054	23	2.6	24	84	2	79	13	11	22	52	1.72
232244--232404	64	2.5	63	83	7	182	33	17	21	27	1.96
232682--232720	18	2.1	19	85	4	53	28	2	15	53	1.55
233772--234082	145	2.1	147	94	3	547	27	17	21	34	1.95
234050--234094	23	2.0	23	90	0	72	22	26	26	24	2.00
237122--237173	10	5.0	10	73	17	52	9	9	21	59	1.57
237128--237192	16	4.1	16	89	0	94	9	9	23	58	1.58
237144--237196	26	2.0	26	81	0	61	11	7	20	60	1.55
245192--245233	15	2.7	16	82	14	52	54	4	2	38	1.34
245733--245859	60	2.1	58	80	12	134	33	18	17	30	1.94
255276--255499	117	1.9	117	92	0	376	32	19	32	16	1.94
255269--255580	117	2.7	116	83	4	315	33	19	31	15	1.93
256188--256222	15	2.3	15	90	9	54	20	11	34	34	1.88
267014--267047	17	1.9	18	88	5	52	70	2	11	14	1.27
275643--275801	43	3.7	43	80	5	169	23	20	5	51	1.66
279148--279462	99	3.2	99	96	0	576	43	18	17	21	1.88
284910--285041	67	2.0	68	89	1	203	31	18	13	35	1.90
310162--310657	210	2.4	210	80	3	568	31	21	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310596--310977	194	2.0	194	98	0	737	27	23	14	33	1.94
311979--312025	21	2.2	21	100	0	94	44	8	38	8	1.65
317278--317318	19	2.2	19	95	0	73	41	0	0	58	0.98
317504--317603	35	2.7	35	81	6	101	39	15	13	33	1.85
318025--318051	2	13.5	2	100	0	54	48	0	0	51	1.00
318162--318196	16	2.1	18	89	10	56	25	8	0	65	1.21
321360--321437	23	3.4	22	77	13	77	75	8	15	0	1.03
321374--321421	16	2.9	16	80	20	55	79	8	12	0	0.94
322022--322065	22	2.0	22	91	8	72	38	22	11	27	1.88
323076--323233	36	4.3	36	91	2	253	26	19	12	41	1.86
322949--323359	175	2.4	171	83	3	475	28	19	13	38	1.90
323119--323371	136	1.8	138	86	3	368	28	18	13	39	1.88
323252--323371	36	3.4	36	85	4	156	25	20	15	39	1.91
324044--325331	105	12.3	105	82	6	1253	32	25	20	21	1.97
324462--325284	98	8.0	98	79	10	524	32	25	21	21	1.98
324080--325329	204	6.0	204	83	7	1275	32	25	19	21	1.97
325793--325867	35	2.1	37	90	5	118	38	16	16	29	1.90
326436--326469	17	2.1	16	88	5	50	26	8	0	64	1.22
327015--327074	31	1.9	32	89	3	95	58	11	1	28	1.43
334197--334248	18	2.8	18	91	2	86	32	1	0	65	1.04
334187--334253	19	3.8	18	75	21	70	32	1	0	65	1.02
348834--349341	165	3.0	165	91	4	854	30	19	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348834--349340	173	3.0	172	93	2	866	30	19	22	28	1.98
353085--353162	41	1.9	41	94	0	138	29	17	24	28	1.98
357250--357320	20	3.6	20	80	3	99	38	21	22	18	1.94
357337--357389	21	2.5	21	87	0	70	22	24	16	35	1.95
357417--357472	15	3.8	15	88	4	87	37	23	17	21	1.94
357502--357547	19	2.3	20	85	10	60	30	26	13	30	1.93
358250--358303	24	2.2	24	93	0	90	20	18	20	40	1.91
360661--360752	20	4.6	21	82	8	120	35	22	20	20	1.96
360661--360754	40	2.3	40	89	3	136	35	22	21	21	1.96
360706--360846	53	2.6	53	87	2	192	42	19	22	15	1.88
360759--360846	20	4.8	20	78	17	109	46	18	21	13	1.83
362956--363004	20	2.5	20	86	0	71	34	24	20	20	1.96
363049--363136	20	4.4	20	95	0	158	19	18	21	40	1.91
363011--363136	40	3.3	40	83	9	158	18	19	20	41	1.91
364988--365027	20	2.0	20	100	0	80	55	20	15	10	1.68
364992--365037	20	2.3	20	88	0	65	47	28	15	8	1.74
365083--365129	20	2.3	20	88	0	67	21	19	21	38	1.94
365747--365792	21	2.2	21	92	0	74	39	17	26	17	1.91
374340--374392	2	26.5	2	100	0	106	49	0	0	50	1.00
381718--381747	8	3.8	8	90	0	51	43	13	20	23	1.86
386901--387012	35	3.2	35	88	2	154	42	20	0	35	1.58
388062--388174	35	3.2	34	88	5	163	33	0	23	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392077--392116	18	2.2	18	90	4	62	57	2	0	40	1.12
393142--393168	12	2.2	12	100	0	54	25	7	14	51	1.68
405757--405795	18	2.2	18	85	0	51	33	10	5	51	1.58
407024--407073	17	3.0	17	88	2	66	32	2	4	62	1.25
407033--407078	16	2.9	16	87	6	58	30	2	2	65	1.16
409385--409416	2	16.0	2	100	0	64	50	0	0	50	1.00
410312--410374	20	2.9	22	84	15	87	26	22	19	31	1.97
410426--410472	19	2.6	19	86	6	62	27	25	19	27	1.99
410974--411013	10	4.0	10	90	0	62	65	0	35	0	0.93
410974--411013	7	5.9	7	85	5	55	65	0	35	0	0.93

Tables:   1   2   3   4