genome.fa.s7837.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007837.1 Hibiscus syriacus cultivar Beakdansim tig00110186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1003650

Tables:   1   2   3   4   

This is table  4  of  4  ( 457 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786824--787230	217	1.9	212	87	5	593	30	17	20	31	1.95
794925--794981	29	2.0	28	86	6	78	42	28	10	19	1.84
801594--801727	31	4.3	30	84	6	169	52	12	12	22	1.73
801594--801727	62	2.2	62	90	0	205	52	12	12	22	1.73
803273--803457	62	3.0	61	86	4	246	30	11	21	36	1.88
804356--804413	30	1.9	30	92	0	98	60	5	5	29	1.40
804831--804869	15	2.7	14	88	4	51	46	0	2	51	1.14
810909--810946	20	1.9	20	94	0	67	13	26	39	21	1.89
813394--813432	20	2.0	20	84	0	51	23	7	23	46	1.78
813611--813669	20	2.8	21	79	10	66	18	23	35	22	1.96
813610--813669	23	2.7	23	77	10	72	18	23	36	21	1.95
821813--822057	61	4.0	62	88	4	336	31	11	21	35	1.89
821813--822043	60	3.8	62	89	2	333	30	10	22	36	1.88
822154--822195	21	2.0	21	85	0	57	19	23	21	35	1.96
824753--824799	24	1.9	25	86	4	69	51	4	2	42	1.33
825186--825265	33	2.4	33	87	4	117	20	28	41	10	1.84
831006--831054	22	2.2	22	100	0	98	20	16	48	14	1.80
831795--831839	23	2.0	23	86	0	63	26	28	24	20	1.99
831818--832122	149	2.0	149	96	0	565	33	20	17	28	1.95
833338--833382	21	2.1	21	87	0	63	15	24	28	31	1.96
835798--836014	87	2.5	87	95	1	391	42	13	7	36	1.72
852572--852678	10	11.1	10	77	11	116	17	24	30	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852572--852680	19	5.7	19	89	7	150	17	25	30	26	1.97
852572--852680	38	2.8	38	94	1	182	17	25	30	26	1.97
852674--852731	17	3.4	17	97	0	107	17	43	24	15	1.87
852721--852749	13	2.2	13	100	0	58	17	31	31	20	1.96
857123--857148	5	5.2	5	100	0	52	80	0	0	19	0.71
859298--859353	29	1.9	29	85	0	76	50	16	7	26	1.70
869389--869482	27	3.1	28	73	18	64	69	1	2	27	1.07
869382--869472	24	3.9	24	71	14	57	70	1	3	25	1.09
869820--869906	33	2.6	33	87	5	122	27	10	20	41	1.85
869957--870018	8	6.9	9	78	21	60	70	0	0	29	0.87
869956--870000	3	15.7	3	86	9	67	71	0	0	28	0.87
870363--871351	84	11.9	83	80	4	960	25	20	24	30	1.98
870432--871351	249	3.7	249	94	1	1502	25	19	24	30	1.98
871491--872136	110	5.9	110	90	0	949	25	19	22	32	1.97
876093--876158	33	2.0	33	93	0	114	31	13	16	37	1.88
876213--876286	3	25.3	3	79	17	77	70	0	0	29	0.88
876403--876487	42	2.0	41	93	2	143	25	16	24	32	1.96
878662--878692	3	10.7	3	93	6	55	29	0	0	70	0.87
878867--878897	2	15.5	2	100	0	62	48	0	0	51	1.00
880091--880173	29	2.8	29	92	1	139	43	9	14	32	1.78
884957--885039	29	2.8	29	92	1	139	43	9	14	32	1.78
893637--893670	16	2.1	16	94	0	59	32	8	26	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898700--898862	21	8.0	21	70	5	109	23	20	21	34	1.97
898721--898887	40	4.1	40	88	3	262	25	19	18	35	1.95
898700--898862	82	2.0	82	92	0	272	23	20	21	34	1.97
898814--898876	19	3.2	19	69	8	63	30	20	17	31	1.96
899575--899940	182	2.0	182	99	0	723	38	17	16	27	1.91
899912--900065	21	7.3	21	84	2	177	38	22	21	17	1.93
899904--900098	42	4.7	42	81	6	209	35	21	21	21	1.96
899912--900098	63	3.0	63	76	7	202	36	21	21	19	1.95
904838--904918	21	3.8	21	69	8	65	32	12	19	35	1.89
905528--905673	43	3.4	42	78	10	145	48	4	19	27	1.68
905576--905834	44	6.1	45	72	11	172	52	6	16	24	1.66
905576--905835	43	6.2	44	73	10	186	52	6	16	24	1.66
917612--917661	23	2.2	23	100	0	100	16	18	22	44	1.87
917620--917669	23	2.4	21	87	12	68	20	12	20	48	1.80
926660--926688	15	1.9	15	100	0	58	34	10	13	41	1.79
935807--935849	17	2.5	17	84	3	59	46	2	13	37	1.57
935806--935850	18	2.5	19	79	10	51	46	2	15	35	1.58
937455--937479	13	1.9	13	100	0	50	64	4	0	32	1.12
938745--938803	29	2.0	30	86	3	84	54	18	11	15	1.71
939219--939268	24	2.0	27	84	11	70	34	4	14	48	1.62
943309--943346	18	2.1	19	90	5	60	47	2	0	50	1.15
943416--943490	27	2.8	28	78	17	79	46	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943416--943501	27	3.1	27	74	12	77	47	0	2	50	1.14
943516--943560	23	2.0	23	86	0	63	53	2	2	42	1.25
943832--943861	15	2.0	15	93	0	51	33	10	13	43	1.77
948823--948974	38	4.0	38	87	5	209	55	17	7	18	1.65
950344--950408	19	3.1	21	73	13	71	20	21	20	38	1.94
950333--950471	42	3.4	42	90	2	219	23	19	20	35	1.95
950401--950528	61	2.1	61	85	0	175	25	18	19	35	1.95
950348--950534	103	1.8	103	86	0	275	24	19	20	35	1.95
950617--950641	6	4.2	6	100	0	50	36	48	16	0	1.46
951269--951293	6	4.2	6	100	0	50	0	16	48	36	1.46
951290--951321	12	2.6	13	85	14	50	37	3	25	34	1.72
960470--960596	19	6.7	19	97	0	218	17	29	29	23	1.97
960591--960646	17	3.4	17	92	5	96	17	41	23	17	1.90
960636--960666	7	4.4	7	100	0	62	16	29	29	25	1.96
961536--961610	31	2.4	31	81	0	96	14	26	30	28	1.95
961583--961659	31	2.5	32	71	12	79	20	27	24	27	1.99
961536--961659	62	2.0	62	81	9	146	17	27	27	27	1.98
964627--964664	20	1.9	20	88	0	58	42	5	0	52	1.24
964998--965069	15	4.9	15	79	3	92	44	5	18	31	1.72
964998--965069	30	2.4	29	93	2	126	44	5	18	31	1.72
965057--965101	20	2.2	20	96	0	81	46	8	13	31	1.74
965422--965478	23	2.5	22	81	10	71	57	1	0	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965446--965522	29	2.6	30	84	15	99	55	2	0	41	1.13
965425--965507	24	3.3	24	76	16	78	56	2	0	40	1.12
965475--965588	52	2.3	51	83	7	144	52	1	0	44	1.17
965781--965896	42	2.8	42	93	1	189	49	18	14	17	1.80
966593--966663	28	2.5	29	93	2	117	30	9	18	40	1.83
969581--969629	2	24.5	2	100	0	98	48	0	0	51	1.00
991996--992054	31	1.9	31	85	0	82	45	5	5	44	1.47
996990--997019	14	2.1	14	93	0	51	63	0	13	23	1.29
998390--998423	16	2.1	16	94	0	59	32	8	26	32	1.87

Tables:   1   2   3   4

The End!