genome.fa.s7840.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007840.1 Hibiscus syriacus cultivar Beakdansim tig00110194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1104544

Tables:   1   2   3   4   

This is table  1  of  4  ( 450 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11687--11718	16	2.0	16	100	0	64	6	18	31	43	1.75
32793--32825	17	1.9	17	93	0	57	45	18	15	21	1.85
41483--41619	40	3.4	40	96	0	247	43	30	10	15	1.80
43961--44020	30	2.0	30	96	0	111	31	6	25	36	1.82
44729--44757	10	2.9	10	100	0	58	51	20	10	17	1.74
44728--44805	10	7.1	10	73	18	57	60	17	8	12	1.58
44755--44828	33	2.2	33	85	0	103	63	17	8	10	1.50
44730--44836	23	4.6	23	72	10	83	60	19	8	11	1.55
46573--46666	34	2.7	35	73	20	97	70	3	4	22	1.19
46585--46645	25	2.6	23	75	17	63	73	1	3	21	1.06
47292--47348	3	18.7	3	86	13	73	68	0	0	31	0.90
47291--47348	22	2.7	23	86	10	86	68	0	0	31	0.89
47293--47349	16	3.5	17	78	21	68	68	0	0	31	0.90
49194--49253	25	2.3	26	80	8	68	36	23	6	33	1.81
54556--54625	33	2.2	33	94	2	124	11	8	40	40	1.72
55164--55208	18	2.6	18	92	3	74	28	24	8	37	1.86
63869--63918	20	2.5	20	93	0	82	52	8	20	20	1.71
65734--66102	20	18.5	20	85	4	458	34	26	18	20	1.96
67141--67464	33	9.5	34	81	14	254	46	18	20	13	1.83
67169--67442	52	5.2	52	92	4	423	47	17	21	13	1.82
67227--67464	85	2.8	85	89	6	351	46	18	21	14	1.83
67471--67572	19	5.6	19	85	12	151	14	23	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67678--67714	14	2.6	14	91	0	65	45	21	0	32	1.52
69639--69704	19	3.4	20	87	6	91	45	27	16	10	1.80
69695--69749	14	3.6	14	76	21	56	47	21	20	10	1.80
69676--69768	33	2.8	33	96	0	168	47	20	20	11	1.81
69655--69773	19	6.8	19	78	18	123	47	21	20	10	1.81
69769--69897	19	7.3	19	75	17	125	8	17	28	45	1.77
69769--69860	33	2.8	33	93	3	150	7	18	28	45	1.76
69929--70395	93	5.0	93	98	0	909	46	19	12	21	1.83
69929--70395	185	2.5	186	98	0	909	46	19	12	21	1.83
72101--72190	14	5.7	14	74	23	81	42	23	25	8	1.83
72093--72207	33	3.5	33	95	0	212	45	20	24	9	1.81
72100--72212	19	6.8	18	72	23	88	43	22	24	9	1.83
72224--72278	14	3.6	14	73	21	56	9	25	23	41	1.83
72208--72278	33	2.2	33	94	0	124	8	22	25	43	1.81
72221--72299	33	2.4	33	89	0	113	10	26	22	40	1.86
72233--72318	19	4.7	19	72	16	65	11	25	19	43	1.85
72398--72468	33	2.2	33	92	0	115	47	18	22	11	1.80
72650--72704	22	2.5	22	78	0	65	20	14	40	25	1.90
72850--73042	20	9.6	20	82	5	219	19	19	25	35	1.95
72850--73042	60	3.2	60	83	0	251	19	19	25	35	1.95
73098--73149	20	2.6	20	96	0	95	21	13	26	38	1.90
73511--73551	21	2.0	21	90	0	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75673--75705	2	17.0	2	87	6	50	45	0	0	54	0.99
82821--82910	44	2.0	44	93	0	153	28	20	7	43	1.79
83398--83424	3	9.0	3	100	0	54	33	0	33	33	1.58
85569--85615	20	2.3	20	78	10	51	10	12	4	72	1.25
90019--90045	2	13.5	2	100	0	54	48	0	0	51	1.00
90756--90935	58	3.1	58	82	3	182	40	14	12	33	1.83
100726--100800	25	3.0	25	100	0	150	28	16	20	36	1.93
100868--100910	3	14.3	3	90	9	70	69	0	0	30	0.88
101196--101404	89	2.3	89	97	0	391	25	18	31	24	1.98
101284--101579	129	2.3	128	88	1	430	23	20	31	25	1.98
101155--101566	43	9.6	40	67	16	148	25	18	31	24	1.98
101079--101573	218	2.3	217	89	3	743	25	18	31	24	1.98
101079--101566	89	5.6	84	78	11	311	25	18	30	24	1.98
101592--101645	28	1.9	28	85	7	74	50	16	12	20	1.78
101829--102058	63	3.6	64	82	7	279	44	13	11	29	1.80
101829--102042	67	3.3	67	84	4	280	43	13	11	30	1.80
101942--102042	30	3.1	30	69	17	94	42	13	10	32	1.80
101829--102058	64	3.6	64	83	6	288	44	13	11	29	1.80
102151--102239	29	3.1	29	85	8	110	44	11	12	31	1.77
102186--102253	28	2.4	27	83	9	84	48	16	11	23	1.79
102533--102627	36	2.7	35	88	3	136	34	11	22	31	1.90
102593--102651	30	2.0	30	96	0	109	42	13	22	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102628--102961	104	3.2	103	81	7	298	41	11	17	30	1.84
102675--102979	104	2.9	103	85	7	377	41	11	16	31	1.83
102995--103103	38	2.9	36	80	6	110	35	10	19	34	1.85
103421--103454	4	9.0	4	87	12	54	23	0	26	50	1.50
103421--103462	22	1.9	22	95	0	57	21	0	28	50	1.49
103421--103462	18	2.3	18	87	0	57	21	0	28	50	1.49
105294--105375	26	3.4	26	69	19	86	40	8	25	25	1.84
105282--105375	46	2.1	45	89	2	143	37	8	26	27	1.85
106780--106841	32	2.0	32	96	3	117	61	9	14	14	1.57
110413--110487	25	3.0	25	100	0	150	28	16	20	36	1.93
110555--110597	3	14.3	3	90	9	70	69	0	0	30	0.88
110555--110597	19	2.4	19	92	7	72	69	0	0	30	0.88
120404--120559	78	2.0	76	84	7	199	46	5	5	42	1.49
120423--120567	76	1.9	78	85	7	197	48	3	4	43	1.41
121898--121953	20	2.8	20	86	2	76	39	21	17	21	1.93
121916--121987	20	3.7	19	78	12	74	37	20	13	27	1.91
122879--122932	24	2.2	24	93	0	90	22	16	18	42	1.89
125191--125226	18	2.0	18	88	0	54	55	22	2	19	1.56
125545--125666	20	6.1	20	92	0	190	19	20	21	38	1.94
125757--125806	25	2.0	25	96	0	91	26	8	22	44	1.80
126193--126229	18	2.1	18	89	0	56	32	5	10	51	1.60
126185--126237	24	2.2	24	86	0	70	35	3	13	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126529--126615	39	2.2	39	93	0	156	45	21	14	17	1.84
126805--126879	20	3.8	20	78	0	87	22	20	18	38	1.93
126951--127042	33	2.6	33	81	8	94	52	15	1	31	1.50
130962--131008	22	2.1	22	96	0	85	21	14	42	21	1.88
133403--133450	14	3.4	14	77	8	53	58	20	2	18	1.49
141321--141378	29	2.1	28	81	15	68	46	13	15	24	1.82
141450--141542	24	3.5	24	71	27	73	34	16	13	35	1.88
141470--141530	30	1.9	32	87	9	90	44	14	13	27	1.83
141501--141598	41	2.4	39	77	12	101	33	13	11	41	1.80
141526--141559	17	2.0	17	88	0	50	44	8	5	41	1.60
142012--142049	12	3.1	12	88	3	58	34	0	31	34	1.58
142490--142548	29	2.0	29	100	0	118	18	44	6	30	1.76
147642--147757	64	1.9	59	87	8	169	35	4	16	43	1.67
147901--147954	2	27.5	2	92	3	92	46	1	0	51	1.11
148213--148251	15	2.7	15	84	4	53	23	33	15	28	1.95
148533--148579	2	24.0	2	93	4	69	44	0	0	55	0.99
149133--149174	2	21.0	2	100	0	84	50	0	0	50	1.00
156228--156801	257	2.3	246	87	9	784	27	11	18	41	1.85
157549--157605	2	28.5	2	100	0	114	0	49	0	50	1.00
164669--164723	27	2.0	27	96	0	101	29	27	7	36	1.84
165965--166469	243	2.1	241	80	2	568	39	17	16	27	1.91
168861--168991	32	4.1	33	89	3	162	52	6	23	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173191--173881	238	2.9	236	88	2	985	37	16	17	28	1.91
173882--174654	234	3.3	235	82	6	874	39	15	16	29	1.89
172853--174520	674	2.5	676	84	3	2084	37	16	17	28	1.91
174585--174750	86	1.9	86	96	0	305	50	9	12	28	1.71
180404--180494	46	2.0	46	91	0	146	32	10	12	43	1.77
180822--181390	284	2.0	284	98	0	1102	38	18	15	26	1.91
192092--192130	20	2.0	20	85	10	53	66	0	0	33	0.92
193106--193158	27	2.0	25	89	7	79	41	3	0	54	1.18
193106--193179	27	2.8	26	80	8	78	40	2	1	55	1.22
202908--202942	14	2.5	14	85	0	52	20	22	22	34	1.97

Tables:   1   2   3   4