genome.fa.s7840.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007840.1 Hibiscus syriacus cultivar Beakdansim tig00110194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1104544

Tables:   1   2   3   4   

This is table  2  of  4  ( 450 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204633--204682	24	2.1	24	100	0	100	34	36	12	18	1.87
207531--207564	16	2.1	16	100	0	68	38	11	17	32	1.86
208668--208700	17	1.9	17	88	11	50	66	0	0	33	0.92
212287--212325	19	2.1	19	90	0	60	48	0	2	48	1.15
216245--216271	12	2.2	12	100	0	54	25	0	33	40	1.56
219803--219850	15	3.2	15	93	0	87	58	0	0	41	0.98
219789--219850	30	2.0	33	90	9	103	56	0	1	41	1.09
220139--220166	2	14.0	2	100	0	56	50	0	0	50	1.00
222233--222287	6	9.2	6	75	0	56	25	14	23	36	1.93
222222--222281	18	3.3	18	92	0	93	23	15	26	35	1.94
234162--234194	16	2.1	16	94	0	57	0	45	0	54	0.99
249663--249701	17	2.3	17	100	0	78	12	23	46	17	1.83
249699--249803	19	5.5	19	80	6	115	27	29	26	16	1.97
249703--249804	9	10.8	9	76	11	71	27	29	26	16	1.97
249699--249804	38	2.8	38	84	4	133	27	29	26	16	1.97
250721--250878	21	7.8	20	72	7	86	38	25	17	18	1.92
250845--251038	20	9.6	20	80	5	212	35	25	19	19	1.96
250847--251038	60	3.2	60	84	0	249	34	26	19	19	1.96
251418--251488	33	2.2	33	89	0	106	11	23	16	47	1.79
251568--251671	21	5.4	20	71	15	87	45	19	25	10	1.82
251566--251644	21	3.8	21	79	12	92	45	16	26	11	1.81
251567--251644	41	1.9	41	94	0	138	44	16	26	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251620--251689	33	2.1	33	94	0	122	47	21	24	7	1.76
251626--251700	33	2.3	33	90	0	114	46	25	21	6	1.75
251642--251700	19	3.4	18	71	22	54	45	27	18	8	1.78
251696--251793	19	5.7	19	70	22	90	10	23	22	43	1.83
251718--251807	14	5.7	14	72	23	72	8	24	23	43	1.82
251701--251815	33	3.5	33	97	0	221	9	23	20	46	1.80
253512--253892	93	4.1	93	98	0	735	22	12	18	46	1.83
253936--254064	19	7.3	19	73	17	116	45	27	17	9	1.78
253972--254064	33	2.8	32	90	4	141	46	26	18	8	1.78
253936--254064	52	2.5	52	74	12	138	45	27	17	9	1.78
254081--254137	14	3.7	14	75	20	51	10	19	22	47	1.80
254060--254212	19	8.6	19	76	15	130	10	18	24	46	1.80
254065--254194	33	3.8	33	86	6	154	9	18	24	47	1.77
254095--254212	33	3.2	39	85	7	133	10	17	26	45	1.80
256134--256169	14	2.6	14	95	0	63	33	0	22	44	1.53
256276--256375	19	5.5	19	84	12	147	45	17	23	15	1.85
256397--256548	33	4.4	33	73	17	148	13	23	17	44	1.85
256419--256548	19	7.3	19	79	17	163	13	23	17	45	1.84
256397--256548	52	2.9	52	99	1	295	13	23	17	44	1.85
256607--256704	19	5.4	19	84	13	143	45	17	22	14	1.84
256607--256723	53	2.2	53	98	1	227	44	17	23	13	1.85
259030--259054	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259245--259296	24	2.2	24	82	0	59	38	25	15	21	1.92
259958--260167	20	10.5	20	82	4	208	20	19	24	36	1.95
260154--260236	21	4.0	21	73	6	78	25	16	24	33	1.96
260134--260232	42	2.4	43	77	11	100	21	18	23	37	1.94
266681--266712	16	2.0	16	100	0	64	31	18	18	31	1.95
269181--269292	35	3.2	35	85	0	152	39	23	0	36	1.61
271061--271171	35	3.2	34	88	3	159	35	0	22	42	1.54
275996--276064	30	2.3	30	84	0	93	30	10	14	44	1.78
276148--276216	31	2.2	31	81	5	75	46	11	7	34	1.68
277033--277088	18	3.3	18	66	19	57	10	7	8	73	1.26
277006--277098	32	2.8	32	90	3	132	13	12	9	63	1.52
278592--278734	60	2.4	62	77	12	147	38	7	18	35	1.79
283899--284134	42	5.6	42	99	0	454	17	35	20	26	1.95
290616--290645	15	2.0	15	100	0	60	26	13	20	40	1.89
313347--313388	23	1.9	21	85	9	57	11	16	7	64	1.48
314106--314479	183	2.0	189	96	3	706	19	18	20	41	1.91
318410--318551	21	6.7	21	80	12	157	30	27	16	25	1.97
318410--318552	44	3.4	43	81	8	179	30	27	16	25	1.97
318686--318735	21	2.4	21	93	0	82	30	24	8	38	1.84
319238--319293	22	2.5	22	91	0	94	26	30	16	26	1.96
320365--320403	18	2.2	18	95	0	69	51	15	10	23	1.73
336599--337003	200	2.0	202	96	0	742	36	15	25	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338991--339070	39	2.1	39	95	0	142	37	16	13	32	1.88
355193--355236	23	1.9	23	100	0	88	38	18	13	29	1.89
359262--359321	29	2.1	29	93	0	102	50	18	6	25	1.71
368439--368515	24	3.6	22	75	20	67	29	19	25	24	1.98
370080--370129	23	2.2	23	88	0	73	18	30	24	28	1.97
370087--370145	23	2.6	23	80	0	64	20	23	23	32	1.98
377808--377838	15	2.1	15	93	0	53	54	0	0	45	0.99
382751--382792	19	2.1	21	86	8	61	61	11	4	21	1.48
382752--382812	19	3.1	20	78	17	58	59	9	8	22	1.56
382803--383611	412	2.0	412	95	1	1469	35	19	14	30	1.91
386345--386449	24	4.4	24	75	8	97	52	15	12	20	1.74
386345--386405	12	5.1	12	69	15	54	57	16	9	16	1.64
395699--395726	2	14.0	2	100	0	56	50	0	0	50	1.00
398018--398051	18	1.9	17	88	5	50	64	0	0	35	0.94
400681--400717	18	2.1	18	89	0	56	59	18	18	2	1.50
408648--408746	49	2.0	50	80	9	114	47	2	0	50	1.12
408725--408793	32	2.3	30	82	12	79	44	0	4	50	1.21
408835--408897	23	2.7	23	80	5	63	46	1	1	50	1.20
408882--408944	26	2.3	27	82	15	76	49	1	0	49	1.10
408912--408984	29	2.5	30	82	13	89	53	1	0	45	1.09
408872--409041	58	3.0	58	74	15	142	51	2	0	45	1.18
409230--409341	42	2.7	42	87	0	152	49	15	16	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410462--410530	34	2.0	35	94	2	122	26	17	24	31	1.97
412567--412593	13	2.1	13	100	0	54	55	0	0	44	0.99
414081--414161	36	2.3	36	97	2	155	45	16	4	33	1.68
416260--416640	190	2.0	190	98	0	735	29	17	19	32	1.95
420987--421039	15	3.4	15	78	5	61	47	11	7	33	1.68
421271--421316	12	3.6	12	81	16	56	17	19	17	45	1.85
421270--421309	15	2.9	14	85	14	57	20	17	15	47	1.83
433332--433365	11	3.0	11	91	4	50	47	11	0	41	1.40
436691--438025	105	12.7	105	95	1	2333	33	24	18	23	1.97
436691--438025	523	2.5	525	94	1	2365	33	24	18	23	1.97
438600--438633	11	3.0	11	91	4	50	47	11	0	41	1.40
443160--443193	16	2.1	17	88	5	52	32	17	14	35	1.91
443875--443939	32	2.0	33	84	6	87	23	3	4	69	1.21
447772--447808	3	12.7	3	94	5	67	64	0	0	35	0.94
447775--447808	17	2.0	17	100	0	68	64	0	0	35	0.94
452542--452608	36	1.9	34	87	6	98	37	0	2	59	1.13
455395--455756	22	16.5	22	88	3	541	48	11	0	40	1.39
461479--461546	33	2.1	33	94	0	118	45	25	19	10	1.81
464907--465053	60	2.5	60	79	11	160	32	20	5	41	1.75
468152--468223	29	2.5	30	86	4	94	30	25	4	40	1.74
468422--468469	21	2.3	21	85	7	71	68	0	0	31	0.90
475922--476278	179	2.0	178	97	1	680	40	13	9	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483310--483356	24	1.9	25	91	4	78	25	27	19	27	1.99
500156--500619	234	2.0	233	93	0	784	43	21	9	25	1.83
502683--502722	17	2.3	18	86	4	55	57	2	0	40	1.12
502900--502936	20	1.9	19	89	10	58	45	10	24	18	1.81
505102--505265	81	2.0	81	96	0	301	42	3	6	47	1.47
517994--518052	11	5.7	11	84	15	90	49	15	0	35	1.45
517992--518053	20	3.1	20	100	0	124	51	14	0	33	1.43
518419--518468	2	26.0	2	76	8	50	52	0	0	48	1.00
518470--518538	5	12.8	5	77	19	52	46	0	0	53	1.00
518419--518516	32	2.8	34	81	10	110	48	0	0	51	1.00

Tables:   1   2   3   4