genome.fa.s7840.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007840.1 Hibiscus syriacus cultivar Beakdansim tig00110194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1104544

Tables:   1   2   3   4   

This is table  4  of  4  ( 450 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830408--830454	23	2.0	24	91	4	78	44	0	21	34	1.52
830668--830852	31	6.0	31	91	3	295	20	19	22	37	1.94
833953--833998	21	2.2	21	88	0	65	30	28	26	15	1.96
834629--834675	23	2.0	24	91	4	78	44	0	21	34	1.52
834891--835077	31	6.0	31	94	1	313	20	19	22	37	1.94
841397--841450	21	2.6	21	93	0	90	48	7	35	9	1.63
842943--843100	67	2.4	68	89	5	250	37	19	16	26	1.93
855553--855607	28	2.0	28	88	0	83	29	25	14	30	1.95
859147--859176	2	15.0	2	100	0	60	50	0	0	50	1.00
866912--866969	28	2.1	28	100	0	116	13	51	10	24	1.72
874382--874415	17	1.9	17	88	5	50	55	0	2	41	1.15
883362--883386	2	12.5	2	100	0	50	52	0	0	48	1.00
888726--888908	90	2.0	90	100	0	366	48	14	14	22	1.80
892408--892732	161	2.0	162	98	1	634	34	18	17	29	1.94
894417--895235	411	2.0	410	98	0	1586	32	27	12	27	1.93
898614--898772	61	2.6	61	77	10	146	32	13	5	49	1.64
903521--903672	23	6.7	23	75	6	112	39	21	19	19	1.93
903516--903666	67	2.2	69	84	4	200	39	20	19	21	1.93
912345--912427	43	1.9	44	82	7	107	51	7	14	26	1.68
927782--927819	16	2.2	18	86	9	53	26	10	10	52	1.68
930285--930327	21	2.0	21	100	0	86	23	16	18	41	1.89
934734--934772	19	2.1	18	85	4	51	35	10	5	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942588--942634	2	23.5	2	100	0	94	48	0	0	51	1.00
944199--944311	33	3.4	33	76	4	111	39	25	29	5	1.78
947754--947778	13	1.9	13	100	0	50	56	4	0	40	1.18
959595--959702	54	2.0	54	94	0	189	35	25	1	37	1.67
965811--965847	18	2.1	18	85	14	51	43	8	0	48	1.32
968041--968065	13	1.9	13	100	0	50	48	0	8	44	1.32
968298--968338	17	2.5	17	88	4	57	41	7	14	36	1.74
968306--968341	17	2.1	17	94	0	63	52	5	8	33	1.55
973598--973676	38	2.1	38	83	4	97	41	11	6	40	1.66
977698--977726	13	2.2	13	100	0	58	27	0	0	72	0.85
981868--981914	23	2.0	23	100	0	94	17	8	31	42	1.79
992757--992808	20	2.6	20	96	0	95	38	26	13	21	1.90
992864--993057	20	9.6	20	76	8	76	35	25	19	19	1.95
992860--993057	40	5.0	39	81	4	200	35	26	19	19	1.95
992864--993056	60	3.2	60	83	0	251	35	25	19	19	1.95
993438--993508	33	2.2	33	92	0	115	11	22	18	47	1.80
993629--993683	14	3.6	14	73	21	56	41	23	25	9	1.83
993629--993699	33	2.2	33	94	0	124	43	25	22	8	1.81
993695--993792	19	5.7	19	70	22	81	10	24	22	42	1.84
993717--993806	14	5.7	14	74	23	81	8	25	23	42	1.83
993700--993814	33	3.5	33	95	0	212	9	24	20	45	1.81
995511--995889	92	4.1	93	98	0	726	22	12	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995511--995891	185	2.1	185	97	1	728	22	12	18	46	1.82
995933--996061	19	7.3	19	75	17	125	45	28	17	8	1.77
995969--996061	33	2.8	32	91	4	150	46	27	18	7	1.76
995933--996061	52	2.5	52	74	14	140	45	28	17	8	1.77
996057--996191	19	7.6	19	75	16	128	11	19	23	45	1.82
996079--996135	14	3.7	14	77	20	60	10	21	22	45	1.82
996062--996154	33	2.8	33	95	0	168	10	20	21	47	1.80
998094--998129	14	2.6	14	95	0	63	33	0	22	44	1.53
998236--998337	19	5.6	19	84	13	151	44	17	23	14	1.86
998370--998639	19	15.2	19	81	15	346	14	20	18	47	1.83
998344--998611	52	5.0	52	91	4	428	14	20	17	47	1.83
998344--998611	109	2.5	104	89	6	437	14	20	17	47	1.83
998344--998639	33	8.5	33	74	21	155	14	20	18	46	1.83
1000921--1000945	12	2.1	12	100	0	50	0	28	0	72	0.86
1001120--1001166	24	2.0	24	87	8	69	38	21	14	25	1.92
1001849--1002217	20	18.5	20	86	5	442	20	18	25	34	1.96
1008082--1008106	2	12.5	2	100	0	50	48	0	0	52	1.00
1012168--1012245	32	2.4	32	82	6	95	29	11	12	46	1.77
1012523--1012547	12	2.1	12	100	0	50	40	0	0	60	0.97
1012832--1012909	32	2.4	32	95	0	147	39	11	29	19	1.87
1012898--1012965	31	2.2	31	86	0	91	41	13	22	23	1.89
1013087--1013127	22	1.9	22	90	5	66	46	4	2	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013589--1013649	29	2.1	28	82	8	70	55	1	1	40	1.19
1018087--1018241	60	2.6	60	80	12	167	31	22	7	38	1.83
1018387--1018523	59	2.3	59	81	3	150	42	0	21	35	1.59
1027050--1027103	20	2.6	21	75	13	58	59	0	25	14	1.36
1032598--1032630	17	1.9	17	93	0	57	33	24	18	24	1.97
1038619--1038657	14	2.9	13	85	14	53	61	5	0	33	1.18
1038848--1038916	23	2.9	24	78	8	70	46	0	2	50	1.16
1044909--1044974	30	2.2	30	91	0	105	46	7	6	39	1.57
1050882--1050957	40	1.9	40	83	0	98	38	19	17	25	1.93
1060740--1060776	17	2.3	17	86	9	51	29	5	5	59	1.42
1061768--1061936	58	2.8	59	88	4	232	42	13	18	25	1.86
1066030--1066076	24	1.9	25	86	4	69	42	6	10	40	1.65
1066162--1066188	2	13.5	2	100	0	54	48	0	0	51	1.00
1068818--1068863	19	2.3	21	78	14	62	69	0	4	26	1.07
1070708--1070739	16	2.0	16	93	0	55	34	0	0	65	0.93
1077705--1077836	27	4.9	27	69	14	83	37	23	16	21	1.93
1082024--1082104	29	2.8	29	84	1	101	37	1	14	46	1.53
1083253--1083356	52	2.1	49	94	5	181	40	0	23	36	1.55
1083856--1083921	21	3.0	22	88	4	98	19	25	28	25	1.99
1087021--1087060	20	2.1	19	85	4	53	27	27	27	17	1.98
1088715--1088780	22	3.0	22	93	0	114	19	25	27	27	1.99
1089883--1089986	29	3.6	29	86	0	136	32	0	17	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097606--1097679	38	1.9	38	94	0	130	44	17	14	22	1.86
1098594--1098643	18	2.8	18	100	0	100	24	16	22	38	1.93

Tables:   1   2   3   4

The End!