genome.fa.s7846.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007846.1 Hibiscus syriacus cultivar Beakdansim tig00110202_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  846497

Tables:   1   2   3   4   

This is table  2  of  4  ( 396 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286005--286078	21	3.5	21	80	7	96	14	20	17	47	1.83
286158--286228	33	2.2	33	92	0	115	47	15	23	12	1.80
286608--286780	20	8.6	20	83	6	206	18	19	27	35	1.95
287007--287197	2	110.5	2	66	27	55	55	0	0	43	1.07
286989--287199	61	3.3	60	80	12	192	56	0	0	42	1.06
286997--287191	69	2.8	68	82	14	240	56	0	0	42	1.07
286989--287201	44	4.9	45	72	17	173	56	0	0	42	1.06
290564--290613	27	1.9	26	84	8	66	46	20	10	24	1.81
292322--292364	3	14.0	3	90	4	68	32	0	2	65	1.06
293700--293848	30	5.0	29	70	11	95	17	12	13	57	1.66
293700--293849	60	2.5	61	81	6	173	18	12	13	56	1.66
296001--296114	57	2.0	57	94	0	201	31	8	28	31	1.87
303512--303562	23	2.2	24	89	3	77	45	0	0	54	0.99
303519--303561	18	2.4	18	80	7	52	46	0	0	53	1.00
309857--309931	23	3.3	23	86	0	105	25	29	20	25	1.99
319056--319108	2	26.0	2	80	3	61	45	0	1	52	1.11
328602--328645	13	3.4	13	100	0	88	52	0	34	13	1.41
328713--328737	6	4.2	6	100	0	50	0	36	16	48	1.46
339128--339190	19	3.4	18	73	16	56	36	0	6	57	1.24
340581--340677	32	3.2	29	72	21	83	43	0	1	55	1.06
340591--340623	11	3.1	11	86	8	50	51	0	0	48	1.00
340670--340706	17	2.2	16	90	4	56	45	8	2	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341521--341602	22	3.7	23	78	4	87	46	17	14	21	1.84
342072--342592	256	2.0	261	98	1	1007	39	6	9	44	1.63
344452--344723	81	3.4	81	90	1	386	27	23	12	36	1.91
344665--344868	67	3.0	67	85	2	266	29	26	11	31	1.92
345065--345216	55	2.8	55	81	7	175	34	18	12	34	1.88
345573--345626	22	2.6	21	88	8	76	29	18	16	35	1.93
350806--350855	25	2.0	25	92	0	82	26	12	28	34	1.92
351563--351647	42	2.0	42	97	0	161	20	25	17	36	1.94
353008--353050	20	2.2	20	95	0	77	34	32	23	9	1.87
358548--358591	18	2.4	18	96	0	79	27	34	9	29	1.87
364318--364357	20	2.0	20	85	0	53	10	2	22	65	1.35
367198--367251	2	27.0	2	92	0	90	50	3	0	46	1.19
368220--368253	17	2.1	17	88	5	52	38	17	14	29	1.90
368277--368325	16	3.0	16	87	3	62	34	16	16	32	1.91
372542--372773	20	11.5	20	81	4	198	38	21	18	21	1.93
372542--372772	40	5.7	40	85	3	225	38	21	17	22	1.93
373623--373682	24	2.5	24	83	0	84	25	18	18	38	1.93
376095--376149	20	2.8	20	94	0	92	30	23	23	21	1.99
376121--376283	38	4.4	36	87	4	170	44	16	21	17	1.86
376154--376283	19	6.8	19	94	0	224	46	14	20	18	1.83
376287--376373	20	4.7	19	75	16	94	12	22	19	44	1.84
376475--376511	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379927--379966	19	2.1	19	90	0	62	50	17	20	12	1.78
379962--380042	33	2.5	33	91	0	126	11	20	20	46	1.81
379992--380096	19	5.6	19	69	20	60	13	20	19	47	1.82
380661--380871	20	10.4	20	78	5	217	20	18	24	37	1.94
380661--380852	81	2.4	80	91	1	312	20	17	23	38	1.93
380661--380871	41	5.2	41	87	1	309	20	18	24	37	1.94
380661--380911	81	3.1	81	81	6	285	20	17	24	37	1.94
397493--397545	6	8.8	6	82	0	61	11	45	5	37	1.64
397493--397545	18	2.9	18	97	0	97	11	45	5	37	1.64
407177--407242	34	1.9	34	87	0	96	25	7	21	45	1.78
409271--409304	18	1.9	18	88	5	52	26	32	26	14	1.95
415090--415166	38	2.0	38	97	0	145	15	28	11	44	1.82
424425--424729	51	6.2	51	84	9	371	17	15	26	40	1.88
424594--424675	42	2.0	42	97	0	155	17	18	21	42	1.89
424537--424726	93	2.0	93	88	2	283	16	17	25	40	1.90
424654--424771	51	2.3	51	83	0	146	14	20	27	38	1.91
424485--424776	144	2.0	143	81	5	338	18	16	26	38	1.91
426808--426833	13	2.0	13	100	0	52	15	7	23	53	1.67
426876--426972	2	54.0	2	76	20	90	45	0	0	54	0.99
426898--426978	32	2.4	34	87	8	121	45	0	0	54	0.99
432866--432948	31	2.7	31	92	0	130	34	12	20	32	1.89
434987--435040	22	2.3	23	81	15	65	9	16	7	66	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440181--440447	134	2.0	134	99	0	525	43	8	10	37	1.70
440783--440859	31	2.5	29	78	12	82	35	11	0	53	1.38
465703--465753	24	2.1	24	100	0	102	37	17	0	45	1.49
467192--467223	17	1.9	17	93	6	57	37	12	3	46	1.57
470935--470995	25	2.4	26	84	13	83	75	3	6	14	1.13
472269--472308	2	20.5	2	94	5	73	50	0	0	50	1.00
472329--472625	38	7.9	34	71	18	114	43	7	4	45	1.51
472366--472626	38	6.8	38	75	16	177	42	7	4	45	1.51
472331--472626	76	3.9	76	77	13	240	43	7	4	45	1.51
472402--472615	75	2.8	74	78	10	220	42	7	3	46	1.50
472513--472716	101	2.0	99	82	14	249	40	8	4	45	1.57
472588--472649	26	2.5	24	84	5	79	43	9	3	43	1.53
473317--474134	84	9.9	83	78	6	754	25	19	23	31	1.98
473310--474134	165	5.0	162	81	6	777	25	19	23	31	1.98
473318--474134	248	3.3	246	82	3	885	25	19	23	31	1.98
473317--474132	413	2.0	411	86	1	1152	25	19	23	31	1.98
480616--480643	10	2.8	10	100	0	56	82	0	0	17	0.68
480688--481020	40	9.0	34	70	18	122	44	6	3	45	1.45
480720--480969	40	6.6	37	72	16	158	44	5	2	47	1.39
480835--480993	76	2.1	74	75	16	66	45	5	1	47	1.35
480968--480993	13	2.0	13	100	0	52	46	7	7	38	1.61
481147--481280	22	6.4	21	77	10	98	20	17	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481170--481215	19	2.4	19	92	0	83	19	17	19	43	1.88
481189--481298	43	2.6	41	87	5	157	20	17	22	39	1.93
482401--482494	41	2.3	41	85	5	118	40	23	14	21	1.90
482401--482495	21	4.6	20	70	14	68	40	23	15	21	1.91
498295--498399	24	4.5	24	94	4	173	34	18	21	25	1.96
499424--499510	31	2.8	31	78	16	99	31	17	19	32	1.95
501513--501564	21	2.6	20	93	6	88	38	9	17	34	1.82
502349--502400	19	2.7	19	96	0	95	30	19	28	21	1.97
502453--502510	20	2.6	22	86	10	75	31	18	22	27	1.97
503527--503644	31	3.8	31	80	9	134	33	16	19	29	1.94
504437--504574	71	1.9	71	100	0	276	21	20	28	29	1.98
506788--506835	23	2.1	23	84	0	60	37	12	16	33	1.86
506913--506957	22	2.1	21	83	4	54	42	13	6	37	1.70
507264--507326	23	2.7	23	95	0	108	39	20	3	36	1.69
506910--508385	429	3.4	429	97	0	2715	39	12	7	41	1.70
507693--507755	23	2.7	23	92	0	99	38	20	4	36	1.74
508120--508182	23	2.7	23	92	0	99	38	20	4	36	1.74
510988--511480	183	2.7	183	96	0	898	32	17	15	34	1.91
513437--513508	3	24.0	3	73	0	63	23	31	6	37	1.82
513444--513525	36	2.3	36	89	0	119	20	31	8	39	1.83
513438--513525	12	7.3	12	82	0	86	21	31	7	38	1.82
513462--513525	18	3.6	18	80	0	83	18	31	9	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513438--513525	6	14.7	6	79	4	61	21	31	7	38	1.82
514963--515938	200	4.9	200	97	0	1846	31	17	14	36	1.90
516057--516105	19	2.6	19	93	0	80	57	10	2	30	1.43
517894--517959	33	2.0	33	90	0	105	22	48	0	28	1.51
517993--518057	21	3.1	21	88	0	94	18	29	10	41	1.84
520079--520131	24	2.2	24	83	6	63	26	7	13	52	1.66
520271--520313	20	2.3	18	85	14	61	20	16	11	51	1.75
520276--520336	20	3.1	19	79	9	68	18	14	11	55	1.68
520455--520501	20	2.3	20	89	10	78	17	17	10	55	1.69
520243--520713	182	2.6	181	90	2	716	26	16	13	43	1.86

Tables:   1   2   3   4