genome.fa.s7847.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007847.1 Hibiscus syriacus cultivar Beakdansim tig00110204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1444154

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 668 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2926--2968	21	2.0	21	86	0	59	30	27	25	16	1.97
2948--3096	68	2.2	68	87	5	207	26	26	27	19	1.99
3395--3466	29	2.5	29	90	0	108	37	11	12	38	1.79
3757--3823	22	3.0	22	100	0	134	19	26	26	26	1.99
7538--7609	23	3.2	23	73	11	69	22	33	19	25	1.97
26914--26942	14	2.1	14	93	6	51	27	6	0	65	1.18
28604--29087	146	3.3	145	79	3	477	22	24	21	32	1.98
28833--29139	145	2.1	146	88	0	454	21	24	23	30	1.99
29628--29884	112	2.3	112	90	4	403	29	17	24	29	1.97
30055--30570	47	11.5	46	66	17	153	28	17	22	31	1.97
29769--30595	134	6.2	134	93	0	1309	28	18	22	30	1.97
29769--30598	401	2.1	401	91	1	1349	28	18	22	30	1.97
29769--30595	267	3.1	268	92	0	1318	28	18	22	30	1.97
30913--30964	22	2.4	23	81	12	65	32	21	15	30	1.94
30758--31126	184	2.0	186	90	1	580	30	19	15	34	1.93
30945--31726	214	3.7	207	87	5	1069	32	19	15	33	1.93
31722--31965	36	7.0	36	83	7	281	20	19	23	35	1.96
31730--31965	69	3.4	68	86	5	305	20	20	23	35	1.96
33205--33712	125	4.1	125	90	1	736	23	27	16	32	1.96
41940--42423	146	3.3	143	77	6	445	22	23	20	33	1.97
42173--42474	145	2.1	144	86	1	424	21	24	22	31	1.98
42902--43121	110	2.0	111	89	1	336	35	7	8	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44627--44666	18	2.2	18	100	0	80	25	32	22	20	1.98
45157--45228	26	3.0	24	68	27	62	26	6	4	62	1.39
48410--48530	51	2.5	49	82	8	149	28	22	23	25	1.99
48542--48665	50	2.5	49	85	4	149	20	33	31	14	1.93
51679--52034	178	2.0	178	99	0	703	47	16	12	22	1.81
61091--61165	33	2.3	33	97	0	141	24	32	18	25	1.97
61874--61906	17	2.0	17	88	5	50	39	0	0	60	0.97
63316--63486	20	8.5	20	77	8	114	38	25	18	17	1.92
63316--63486	81	2.1	80	79	7	177	38	25	18	17	1.92
63377--63489	20	5.6	20	83	1	136	38	25	18	16	1.92
63316--63486	40	4.2	40	79	7	175	38	25	18	17	1.92
79305--79379	21	3.5	22	76	12	75	49	0	0	50	1.00
79340--79379	13	3.0	13	81	3	53	45	0	0	55	0.99
79553--79604	23	2.3	23	82	0	59	50	0	3	46	1.20
79946--80002	14	3.9	15	79	9	73	33	22	0	43	1.54
81359--81384	5	5.2	5	100	0	52	23	57	19	0	1.40
88553--88584	13	2.3	15	89	10	50	59	3	0	37	1.13
88844--88911	9	7.3	9	73	18	59	73	0	2	23	0.97
88844--88911	28	2.4	28	90	9	120	73	0	2	23	0.97
88880--88922	20	2.2	20	86	0	59	65	0	2	32	1.06
88878--88920	18	2.4	17	81	11	50	67	0	2	30	1.03
100005--100133	68	1.9	68	83	0	168	43	17	5	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101358--101397	21	1.9	21	90	10	64	42	12	0	45	1.42
110376--110441	17	3.9	17	73	15	57	59	0	1	39	1.07
131324--131401	38	2.1	38	100	0	156	42	26	7	23	1.81
146364--146410	24	2.0	24	83	8	60	40	2	2	55	1.24
147110--147220	57	1.9	58	94	5	199	50	9	5	35	1.57
147261--147285	13	1.9	13	100	0	50	36	0	16	48	1.46
150166--150323	21	7.8	20	72	7	86	38	25	17	18	1.92
150290--150483	20	9.6	20	80	5	212	35	25	19	19	1.95
150290--150483	60	3.2	60	82	0	244	35	25	19	19	1.95
150866--150936	33	2.2	33	92	0	115	11	22	18	47	1.80
151016--151125	21	5.8	20	74	17	108	45	18	24	11	1.83
151009--151125	41	3.1	38	81	14	145	46	17	25	11	1.81
151076--151132	14	3.7	14	75	20	60	43	22	24	8	1.81
151068--151148	33	2.5	33	95	0	144	46	22	22	8	1.78
151144--151213	19	3.7	19	96	0	122	11	21	22	44	1.84
152911--153378	93	5.1	93	97	0	886	22	12	18	45	1.83
152911--153378	185	2.5	186	97	0	886	22	12	18	45	1.83
153426--153554	19	7.3	19	75	17	125	45	28	17	8	1.77
153462--153554	33	2.8	32	91	4	150	46	27	18	7	1.76
153426--153554	52	2.5	52	74	14	140	45	28	17	8	1.77
153550--153651	19	5.6	19	78	12	106	10	17	24	47	1.80
154149--154184	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154291--154388	19	5.4	19	84	13	143	45	17	22	14	1.84
154291--154406	53	2.2	53	98	1	225	43	18	24	13	1.86
154413--154570	52	3.0	54	88	5	218	13	22	17	46	1.82
154454--154546	33	2.8	33	98	0	177	12	21	18	47	1.82
154473--154527	14	3.6	14	73	21	56	10	23	20	45	1.82
154413--154632	85	2.6	85	94	2	379	13	21	18	46	1.83
154439--154604	52	3.2	52	88	5	221	13	22	16	46	1.82
154413--154646	33	6.9	33	76	14	160	13	21	17	46	1.83
154454--154678	119	1.9	118	84	4	301	15	20	18	45	1.85
156928--156952	12	2.1	12	100	0	50	0	28	0	72	0.86
157127--157173	24	2.0	24	87	8	69	38	21	14	25	1.92
157855--158124	20	13.5	20	86	2	274	20	18	24	37	1.94
157855--158124	40	6.8	40	87	5	307	20	18	24	37	1.94
158091--158188	21	4.8	20	75	15	83	22	17	22	37	1.94
158091--158189	42	2.4	43	78	8	107	22	17	23	37	1.94
158896--158965	29	2.4	30	83	4	81	47	2	4	45	1.37
168366--168522	64	2.4	63	79	10	158	28	17	21	32	1.96
171755--171818	18	3.3	18	72	16	65	23	31	21	23	1.99
173327--173483	64	2.5	62	80	10	156	28	18	20	33	1.96
183593--183630	20	2.0	19	90	10	60	47	10	21	21	1.80
186448--186486	19	2.1	18	90	9	60	35	7	33	23	1.83
186642--186706	33	1.9	34	84	9	89	49	4	1	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200788--200949	81	2.0	81	100	0	324	29	14	18	37	1.91
204633--204670	18	2.2	18	90	4	60	13	55	0	31	1.38
206758--206816	29	2.2	26	76	21	68	25	11	8	54	1.65
206914--206976	23	3.0	20	71	15	63	26	4	15	52	1.63
219031--219071	21	1.9	22	85	5	57	39	0	19	41	1.52
225456--225584	60	2.1	60	85	1	168	34	20	13	31	1.91
239186--239213	4	7.0	4	100	0	56	0	25	0	75	0.81
243930--243956	2	13.5	2	100	0	54	48	0	51	0	1.00
244946--245283	173	2.0	165	93	5	570	33	21	14	31	1.93
254115--254150	17	2.1	17	89	0	54	44	0	0	55	0.99
255659--255721	31	2.1	31	96	3	119	36	12	0	50	1.41
256132--256196	27	2.4	27	87	5	87	33	26	18	21	1.96
258253--258277	2	12.5	2	100	0	50	0	48	0	52	1.00
260463--260513	18	2.9	18	88	2	68	27	33	5	33	1.81
266744--266768	3	8.3	3	100	0	50	32	0	0	68	0.90
266937--267013	29	2.7	29	97	0	145	14	35	27	23	1.93
267074--267113	14	2.9	14	96	0	71	10	30	37	22	1.87
267069--267120	14	3.7	14	82	10	70	9	28	38	23	1.86
267906--267965	30	2.0	30	83	6	77	56	5	1	36	1.31
278366--278526	82	2.0	76	91	7	259	21	19	19	39	1.92
279495--279567	26	2.8	26	89	2	101	19	13	13	53	1.73
286761--286790	16	1.9	16	93	6	53	10	30	0	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286771--286814	18	2.4	19	92	3	72	4	29	0	65	1.12
291888--291921	18	1.9	18	88	5	52	58	2	2	35	1.28
294735--294759	2	12.5	2	100	0	50	48	0	0	52	1.00
303642--303856	100	2.1	102	94	2	380	25	13	24	36	1.92
303873--303935	23	2.7	23	92	0	99	19	28	26	25	1.98
314272--314399	68	1.9	67	87	9	192	25	9	17	48	1.76
319742--319793	23	2.4	21	81	12	68	21	28	26	23	1.99
326511--326550	20	2.0	20	95	0	71	20	32	20	27	1.97
326519--326568	23	2.3	20	86	10	64	22	32	20	26	1.98
333062--333130	30	2.3	30	89	0	102	39	2	23	34	1.70

Tables:   1   2   3   4   5   6