genome.fa.s7847.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007847.1 Hibiscus syriacus cultivar Beakdansim tig00110204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1444154

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 668 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240335--1240532	99	2.0	99	88	0	297	32	15	25	26	1.96
1247932--1247973	22	1.9	22	85	9	59	52	7	19	21	1.69
1250454--1250705	125	2.0	126	98	1	488	48	16	10	24	1.78
1261591--1261635	3	14.3	3	83	4	54	31	0	2	66	1.04
1261865--1261931	30	2.2	32	78	10	77	46	1	0	52	1.09
1263081--1263401	160	2.0	163	98	1	621	30	13	19	37	1.90
1272953--1273186	118	2.0	117	94	0	405	26	13	21	37	1.91
1280724--1280762	15	2.5	17	73	26	50	48	10	0	41	1.37
1297531--1297565	17	2.0	17	88	5	52	45	11	11	31	1.76
1298011--1298066	14	4.1	14	71	17	55	41	0	3	55	1.17
1305005--1305080	36	2.1	36	85	7	100	47	1	3	47	1.29
1307902--1308091	20	9.4	20	79	4	114	36	24	19	19	1.95
1307902--1308090	60	3.1	57	80	8	166	36	24	19	19	1.95
1308650--1308721	20	3.7	20	78	9	76	48	20	12	18	1.80
1308748--1308860	20	6.1	19	76	13	110	11	24	18	45	1.83
1310824--1310871	19	2.5	20	89	3	80	43	20	22	12	1.86
1310896--1310964	20	3.8	19	75	21	85	15	21	17	44	1.86
1310904--1310977	33	2.2	34	92	2	123	13	24	17	44	1.85
1310917--1310997	33	2.4	33	85	2	99	14	24	19	40	1.90
1310971--1311023	20	2.7	20	91	5	81	24	20	22	32	1.98
1313420--1313469	24	2.1	24	88	7	75	40	20	18	22	1.92
1313420--1313487	24	2.8	24	81	0	64	39	19	16	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1314324--1314562	20	11.9	19	78	12	160	20	19	24	35	1.96
1314330--1314600	40	6.8	39	81	6	231	19	19	24	36	1.94
1314330--1314562	59	3.9	58	82	7	234	20	19	24	35	1.96
1314548--1314600	20	2.7	20	91	5	81	13	18	24	43	1.86
1314330--1314599	61	4.5	61	81	7	195	19	19	24	36	1.95
1314650--1314700	20	2.6	19	75	9	57	15	19	31	33	1.93
1324965--1324989	5	5.0	5	100	0	50	80	0	0	20	0.72
1328264--1328371	55	2.0	54	92	1	180	33	32	8	25	1.86
1328647--1328758	54	2.1	53	81	6	127	31	30	15	23	1.95
1328754--1329387	54	11.7	54	87	1	822	25	28	24	21	1.99
1340596--1340641	24	1.9	24	82	8	58	47	0	0	52	1.00
1340684--1340764	19	4.3	19	73	14	62	49	1	1	48	1.17
1340681--1340764	28	3.0	26	78	15	78	51	1	1	46	1.16
1340759--1340804	24	2.0	24	82	4	58	52	2	2	43	1.25
1342121--1342197	35	2.2	35	92	0	127	38	23	1	36	1.63
1345170--1345209	21	1.9	21	89	0	62	10	25	40	25	1.86
1345190--1345252	20	2.9	21	79	9	65	15	25	34	23	1.95
1349060--1349099	21	1.9	21	85	10	55	35	10	2	52	1.48
1351627--1351874	130	1.9	130	92	0	415	35	15	13	35	1.86
1351641--1351905	130	2.0	129	81	4	300	39	13	13	33	1.83
1352343--1352376	16	2.0	18	88	11	54	64	5	2	26	1.30
1354217--1354270	21	2.6	20	81	16	65	25	1	18	53	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1354217--1354266	23	2.3	23	89	6	77	22	2	18	58	1.49
1357474--1357565	48	1.9	48	90	0	148	51	10	15	22	1.74
1357488--1357564	21	3.4	21	69	19	64	57	10	12	19	1.64
1357470--1357576	48	2.2	48	79	0	133	46	9	15	28	1.77
1366959--1367835	156	5.8	160	73	16	659	36	30	17	15	1.91
1367014--1367847	288	2.9	287	87	5	1142	35	31	17	15	1.91
1369370--1369691	93	3.4	92	79	5	324	38	32	12	16	1.86
1378248--1378321	25	2.9	26	91	4	123	5	28	0	66	1.14
1379622--1379671	26	1.9	26	95	0	91	68	0	28	4	1.08
1383567--1383626	30	2.0	31	83	9	79	35	5	13	46	1.65
1384385--1384502	59	2.0	60	81	5	141	39	17	11	30	1.86
1392841--1392892	27	2.0	27	92	3	88	23	26	19	30	1.98
1400828--1400858	15	2.1	15	100	0	62	32	6	41	19	1.77
1405851--1405894	22	2.0	23	86	4	63	52	2	0	45	1.13
1407709--1407758	21	2.3	21	89	3	82	44	8	20	28	1.79
1407709--1407775	21	3.0	21	84	8	71	44	8	17	28	1.79
1413339--1413464	38	3.3	38	88	0	189	29	5	21	43	1.75
1417035--1417103	23	3.0	23	80	0	84	31	26	24	17	1.97
1419560--1419632	29	2.6	29	84	2	94	52	4	0	43	1.20
1422202--1422483	143	2.0	143	100	0	564	16	34	20	28	1.95
1424103--1424165	32	1.9	33	81	9	76	47	6	1	44	1.38
1435970--1435998	3	10.0	3	92	7	51	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437360--1437410	26	1.9	27	84	11	70	58	1	9	29	1.41
1437700--1437762	21	3.0	21	78	2	72	57	7	1	33	1.37

Tables:   1   2   3   4   5   6

The End!