genome.fa.s7847.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007847.1 Hibiscus syriacus cultivar Beakdansim tig00110204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1444154

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 668 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518505--518642	59	2.3	59	84	7	165	37	4	26	31	1.76
519443--519487	20	2.1	22	88	8	67	55	0	6	37	1.26
522344--522397	27	2.0	27	92	7	92	33	27	20	18	1.96
533520--533596	25	3.1	24	73	12	66	54	0	3	41	1.19
533533--533584	20	2.7	19	80	11	52	55	0	3	40	1.18
534834--534864	15	2.0	16	93	6	55	51	3	0	45	1.17
538284--538331	21	2.3	21	82	17	64	54	8	12	25	1.65
548444--548687	134	1.8	135	86	2	357	36	17	10	35	1.84
554191--554257	34	2.0	34	88	8	102	64	13	1	20	1.36
554296--554339	13	3.4	13	80	0	52	70	11	2	15	1.26
554300--554365	25	2.6	26	78	9	73	66	10	3	19	1.35
556577--556610	9	3.9	9	84	7	52	61	2	0	35	1.11
556573--556611	17	2.4	17	95	4	71	61	5	0	33	1.18
559554--559698	75	1.9	75	84	2	193	40	8	12	38	1.74
560972--561017	21	2.2	21	88	7	67	43	0	0	56	0.99
560972--561013	20	2.1	21	86	8	61	40	0	0	59	0.97
564135--564182	24	2.0	24	100	0	96	25	4	29	41	1.74
569747--569885	69	2.0	69	98	0	269	21	17	10	50	1.76
571067--571232	81	2.0	81	95	0	296	55	12	12	19	1.68
574850--574919	30	2.3	30	85	5	86	24	4	11	60	1.49
574863--574919	30	1.9	30	92	0	96	21	3	14	61	1.47
575582--575658	38	2.0	38	89	0	118	42	10	19	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582445--582500	21	2.7	19	75	24	60	44	0	10	44	1.38
582445--582503	14	4.2	14	70	21	52	45	0	10	44	1.37
586760--586938	64	2.8	61	78	16	168	25	18	25	30	1.98
586890--586922	17	1.9	17	93	0	57	15	18	39	27	1.90
586780--586938	63	2.5	64	86	7	193	24	19	25	30	1.98
586891--586935	17	2.6	17	85	3	54	20	17	33	28	1.95
587352--587389	19	2.0	19	100	0	76	36	21	0	42	1.53
588073--588116	21	2.1	21	86	0	61	34	15	43	6	1.74
594788--594946	63	2.5	62	86	10	207	24	20	25	30	1.99
594898--594930	17	1.9	17	93	0	57	15	18	39	27	1.90
594788--594946	64	2.5	64	87	7	202	24	20	25	30	1.99
594899--594943	17	2.6	17	85	3	54	20	17	33	28	1.95
595520--595569	16	3.1	16	91	2	73	32	18	16	34	1.92
602911--602993	30	2.7	31	74	9	80	43	14	4	37	1.67
605139--605269	41	3.2	40	94	4	217	21	19	21	37	1.95
605963--606047	41	2.0	41	86	6	118	37	23	21	17	1.94
605988--606051	21	3.1	21	75	4	76	37	26	18	17	1.93
608262--608311	26	1.9	26	88	8	75	48	0	2	50	1.12
617198--617231	17	2.0	17	88	0	50	38	5	2	52	1.41
622070--622271	105	1.9	105	84	0	269	39	21	15	24	1.92
633904--634081	70	2.5	71	84	6	220	45	23	17	13	1.84
648191--648264	32	2.3	31	93	4	121	52	16	12	18	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656450--656521	2	36.0	2	88	5	110	50	2	0	47	1.15
656591--656630	21	2.0	19	85	9	53	57	5	10	27	1.52
657892--657958	30	2.2	30	89	0	98	10	31	13	44	1.77
665114--665146	16	2.1	16	94	0	57	21	12	18	48	1.80
667189--667259	31	2.3	31	85	0	97	12	25	29	32	1.93
669308--669405	30	3.3	30	80	0	106	24	22	18	34	1.96
671305--671605	162	1.9	162	100	0	602	26	7	16	49	1.72
671767--671809	12	3.6	12	83	0	59	11	16	48	23	1.78
676558--677611	525	2.0	527	92	0	1772	37	22	14	25	1.92
679045--679074	15	2.0	15	93	0	51	56	0	26	16	1.40
684180--684246	20	3.3	20	79	4	89	41	17	22	17	1.90
684250--684364	20	5.7	20	82	2	113	32	25	18	24	1.97
684245--684384	41	3.4	41	79	2	147	35	23	17	23	1.95
684552--684595	22	2.0	22	95	0	79	20	45	15	18	1.85
684831--684904	20	3.8	20	78	8	80	13	17	22	45	1.83
686225--686269	18	2.5	18	88	0	72	26	44	15	13	1.83
686652--686692	6	6.7	6	85	2	55	0	2	21	75	0.92
686652--686685	12	2.8	12	100	0	68	0	0	23	76	0.79
686652--686695	18	2.4	19	88	3	63	0	2	22	75	0.92
686749--686815	20	3.4	20	81	2	73	38	23	22	14	1.92
686804--686861	14	3.9	14	77	16	62	46	24	17	12	1.81
686788--686878	32	2.8	33	93	3	157	46	21	18	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686895--686952	14	3.9	14	79	16	71	8	17	25	48	1.75
686890--686968	32	2.4	33	95	2	142	10	18	24	46	1.80
686890--686968	14	4.8	17	71	22	62	10	18	24	46	1.80
686941--687007	19	3.5	19	77	4	71	17	23	20	37	1.94
688608--688643	14	2.6	14	90	0	54	30	0	22	47	1.52
690198--690320	42	2.9	41	79	7	104	22	17	35	24	1.95
692321--692524	19	11.1	19	75	13	167	45	21	21	12	1.84
692346--692444	33	3.0	33	87	1	135	39	26	23	11	1.88
692520--692586	19	3.5	19	83	2	89	8	16	23	50	1.73
693101--693153	20	2.7	20	88	5	72	26	18	28	26	1.98
693162--693215	20	2.7	20	97	0	99	25	18	24	31	1.97
693102--693236	61	2.2	61	80	2	146	22	19	24	33	1.97
693286--693326	21	2.0	21	85	0	55	34	31	17	17	1.93
724486--724551	30	2.2	30	97	2	125	53	13	10	22	1.71
730054--730168	57	2.0	57	96	0	212	21	18	27	32	1.97
733197--733234	2	19.0	2	100	0	76	50	0	0	50	1.00
741502--741679	60	3.0	59	80	11	186	42	5	20	31	1.75
743632--744032	201	2.0	201	91	0	642	23	21	23	30	1.99
743879--744188	156	2.0	156	92	1	523	23	23	22	30	1.99
743678--744389	357	2.0	357	98	0	1388	23	22	23	30	1.99
745425--745469	23	1.9	24	86	4	65	42	0	2	55	1.12
752155--752239	28	3.1	28	64	16	79	10	17	45	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752142--752248	53	2.0	54	98	1	207	11	18	43	26	1.83
752217--752268	21	2.5	20	93	6	95	9	15	50	25	1.74
752165--752303	74	1.9	74	100	0	278	10	17	46	25	1.81
752847--752896	23	2.3	22	80	10	59	24	24	20	32	1.98
753067--753102	3	12.3	3	88	5	56	72	0	27	0	0.85
753214--753257	21	2.1	21	91	0	70	29	0	15	54	1.42
753234--753292	28	2.1	28	96	0	109	30	0	13	55	1.38
753670--753699	4	7.5	4	92	0	51	26	0	23	50	1.50
753762--753805	23	2.0	23	81	4	54	43	0	6	50	1.29
757150--757397	49	5.1	49	92	2	405	43	0	12	43	1.41
757114--757397	98	2.9	98	89	5	420	44	0	10	44	1.39
757614--757920	11	26.3	11	66	22	96	42	1	10	45	1.48
757618--757678	19	3.4	19	72	21	67	37	0	9	52	1.35
757624--757691	8	8.1	8	78	16	59	33	0	13	52	1.40
757615--757716	35	3.0	35	94	2	172	34	0	13	51	1.41
757624--757683	16	3.6	16	75	20	68	35	0	11	53	1.38
757640--757702	19	3.5	18	75	20	69	31	0	17	50	1.46
757653--757890	86	2.8	84	83	8	254	43	2	9	44	1.48
757775--757861	26	3.5	25	86	9	115	47	2	9	41	1.48
757790--757890	3	34.7	3	72	5	55	51	2	5	39	1.41
757719--757923	23	8.8	23	74	17	124	46	2	8	42	1.47
757609--757876	121	2.2	118	81	9	296	42	1	10	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757842--757929	9	9.9	9	74	16	60	51	1	7	39	1.39
757793--757893	32	3.3	32	80	16	124	50	2	6	39	1.44
760407--760483	29	2.7	29	88	7	106	44	15	1	38	1.55
760439--760803	185	2.0	183	94	5	643	46	14	2	36	1.57
761397--761523	63	2.0	63	95	0	227	36	16	17	29	1.92
761591--761851	130	2.0	130	99	0	513	26	16	19	37	1.92
771205--771282	31	2.5	31	89	0	111	24	25	15	34	1.95
772459--772562	31	3.3	31	85	10	140	26	22	14	36	1.92
772820--772844	3	8.3	3	100	0	50	68	0	0	32	0.90
773028--773084	17	3.2	17	80	9	60	38	1	0	59	1.08

Tables:   1   2   3   4   5   6