genome.fa.s7858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007858.1 Hibiscus syriacus cultivar Beakdansim tig00110220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  969818

Tables:   1   2   3   4   

This is table  1  of  4  ( 442 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18633--18755	61	2.0	61	100	0	246	26	14	28	30	1.95
22713--22803	40	2.3	40	90	1	148	32	15	13	38	1.86
30253--30410	81	2.0	81	94	0	280	17	31	20	30	1.96
30533--30737	27	7.4	27	65	21	86	26	26	22	24	2.00
30523--30825	54	5.5	55	80	8	330	27	25	21	26	2.00
30634--30764	27	4.8	26	67	16	72	25	26	23	23	2.00
30744--30875	54	2.4	54	82	2	147	26	27	18	28	1.98
31691--31758	23	3.0	23	78	2	84	26	23	39	10	1.87
31870--31954	29	2.9	29	85	3	118	24	27	31	16	1.96
41370--41433	27	2.4	26	94	2	110	40	7	26	25	1.82
45146--45170	3	8.3	3	100	0	50	36	0	0	64	0.94
45848--45881	17	2.0	17	88	0	50	26	0	20	52	1.46
46355--46421	24	2.7	25	86	6	66	22	32	17	26	1.96
46366--46421	24	2.3	24	93	0	94	21	30	21	26	1.98
48077--48144	33	2.1	33	91	8	113	44	17	13	25	1.85
53624--53733	54	2.0	54	100	0	220	25	26	21	26	2.00
65974--66031	25	2.2	27	76	14	68	56	1	8	32	1.40
68663--68783	3	39.7	3	90	3	188	33	0	2	63	1.13
69145--69245	42	2.5	39	80	12	112	70	10	18	0	1.16
69231--69257	1	27.0	1	100	0	54	100	0	0	0	0.00
69529--69564	13	2.8	13	100	0	72	0	30	61	8	1.26
69529--69569	7	6.1	7	77	11	50	0	31	58	9	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70823--70864	22	1.9	22	85	0	57	23	7	0	69	1.13
79277--79329	5	10.8	5	79	16	58	83	0	16	0	0.66
79276--79359	6	14.0	6	77	18	86	79	0	16	3	0.86
79271--79358	29	2.9	29	79	16	90	79	0	17	3	0.86
79272--79359	24	3.7	24	82	13	110	79	0	17	3	0.86
79278--79357	35	2.2	37	86	4	110	80	0	16	3	0.86
80300--80597	52	5.8	52	94	0	508	25	14	22	37	1.92
80300--80597	103	2.9	103	94	1	515	25	14	22	37	1.92
80300--80597	155	1.9	155	95	0	533	25	14	22	37	1.92
81150--81950	118	6.9	114	93	1	1223	36	14	20	27	1.92
82248--82371	3	40.7	3	88	3	185	33	0	2	62	1.14
82735--82830	42	2.4	38	81	11	102	68	11	19	0	1.19
82818--82845	1	28.0	1	100	0	56	100	0	0	0	0.00
83116--83144	13	2.2	13	100	0	58	0	31	62	6	1.22
84610--84648	2	19.5	2	100	0	78	51	0	0	48	1.00
90723--90750	10	2.8	10	100	0	56	50	7	0	42	1.30
95422--95451	2	15.0	2	100	0	60	50	0	0	50	1.00
107930--107970	21	2.0	21	95	0	73	43	14	0	41	1.45
110093--110131	20	2.0	20	84	0	51	51	5	0	43	1.24
110417--110576	60	2.7	58	84	6	180	39	3	23	33	1.72
110452--110552	31	3.3	31	71	18	77	37	4	23	33	1.77
110445--110595	60	2.5	60	84	7	164	40	4	21	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112305--112548	127	1.9	127	89	1	382	33	21	13	31	1.93
129485--129523	17	2.2	17	90	4	60	79	5	0	15	0.90
130563--130588	13	2.0	13	100	0	52	69	0	0	30	0.89
131301--131340	21	1.9	21	89	0	62	55	27	2	15	1.53
140193--140271	15	5.4	15	83	11	74	0	13	1	84	0.68
140198--140261	9	7.0	9	90	1	92	0	10	0	89	0.50
140205--140261	1	57.0	1	82	0	69	0	8	0	91	0.43
140601--140670	3	24.3	3	86	5	56	57	0	0	42	0.99
142075--142121	23	2.0	24	91	4	78	44	0	21	34	1.52
142294--142448	31	5.0	31	90	3	242	21	19	21	37	1.94
143333--143388	17	3.2	17	68	26	53	17	25	8	48	1.76
143316--144098	113	7.0	113	93	1	1258	30	18	15	35	1.92
144829--145554	167	4.3	166	93	2	1213	36	22	13	27	1.91
144829--145552	250	2.9	249	94	1	1236	36	22	13	27	1.91
144829--145554	83	8.7	83	93	2	1204	36	22	13	27	1.91
146692--146758	1	67.0	1	78	0	71	2	7	0	89	0.57
146692--146746	18	3.2	17	87	7	85	0	9	0	90	0.44
146698--146758	18	3.3	18	88	4	86	3	6	0	90	0.55
146692--146759	28	2.4	28	87	4	93	2	8	0	88	0.62
146707--146755	25	2.0	25	91	0	80	4	6	0	89	0.57
146692--146758	34	2.0	34	88	5	100	2	7	0	89	0.57
158119--158160	5	8.4	5	82	17	52	0	16	2	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158111--158160	15	3.4	15	81	13	59	0	20	2	78	0.86
158114--158152	18	2.2	17	86	13	60	0	20	0	79	0.73
158628--158691	3	21.3	3	90	6	76	59	0	0	40	0.97
168697--168748	2	27.0	2	88	7	81	53	0	0	46	1.00
168695--168754	8	7.7	7	87	10	57	53	0	0	46	1.00
170983--171012	2	15.5	2	93	6	53	50	0	0	50	1.00
172523--172625	53	1.9	54	80	9	122	51	5	3	38	1.44
173245--173292	22	2.2	22	82	14	55	54	0	8	37	1.31
176701--176799	29	3.3	29	65	5	81	46	13	12	28	1.78
176678--176803	60	2.1	59	88	8	184	42	11	11	33	1.78
179475--179507	17	1.9	18	88	11	52	30	3	9	57	1.45
180918--180942	7	3.6	7	100	0	50	32	40	12	16	1.84
181939--181990	18	2.9	18	82	0	68	51	19	3	25	1.63
181939--181992	6	9.0	6	78	8	56	51	18	3	25	1.62
182875--182999	60	2.1	60	80	3	135	34	11	19	35	1.87
183233--183303	31	2.3	31	90	4	108	39	15	19	25	1.91
184468--184578	33	3.0	37	76	14	113	11	7	35	45	1.68
188951--189000	26	1.9	26	91	0	82	36	18	6	40	1.75
190686--190726	17	2.4	17	83	4	55	46	0	0	53	1.00
192891--192918	2	14.0	2	100	0	56	50	0	0	50	1.00
193141--193168	14	2.0	14	100	0	56	85	7	0	7	0.73
194733--194786	22	2.5	22	81	0	63	57	11	7	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195863--195909	2	23.5	2	95	0	85	46	0	2	51	1.13
196806--196873	31	2.2	31	91	0	109	29	8	13	48	1.72
197015--197075	27	2.2	27	82	2	68	59	0	1	39	1.08
197033--197085	25	2.0	26	86	13	74	56	0	3	39	1.17
198664--198719	2	28.0	2	100	0	112	50	0	0	50	1.00
199728--199761	18	1.9	18	88	5	52	26	32	26	14	1.95
200428--200565	21	6.7	21	71	6	77	37	24	16	21	1.93
200532--200754	20	11.1	20	85	1	232	36	24	19	19	1.95
201444--201490	24	2.0	24	87	8	69	25	14	21	38	1.92
201664--201688	12	2.1	12	100	0	50	72	0	28	0	0.86
203971--204181	33	6.2	34	80	13	206	46	18	21	13	1.82
203985--204187	19	11.7	19	73	20	185	46	18	21	14	1.84
204013--204187	52	3.3	52	95	0	305	46	17	22	14	1.83
204177--204293	53	2.2	52	96	1	216	14	23	17	44	1.85
204196--204293	19	5.4	19	83	13	134	15	22	16	45	1.84
204400--204436	14	2.6	14	91	0	65	45	21	0	32	1.52
206360--206532	19	9.6	19	79	12	177	46	24	19	10	1.81
206454--206510	14	3.7	14	77	20	60	45	24	21	8	1.80
206435--206527	33	2.8	33	98	0	177	47	22	20	9	1.79
206528--206637	19	6.3	19	73	20	105	8	16	30	45	1.76
206528--206619	33	2.8	33	96	3	168	6	17	30	45	1.73
206685--207246	93	6.1	93	99	0	1108	46	19	12	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208946--209009	20	3.2	20	82	4	92	46	15	25	12	1.81
208944--209008	21	3.1	21	82	4	96	47	15	26	10	1.78
208945--209039	20	5.0	20	68	17	67	46	17	24	11	1.81
209051--209107	14	3.7	14	75	20	60	8	24	22	43	1.81
209035--209115	33	2.5	33	95	0	144	8	22	22	46	1.78
209092--209167	21	3.7	21	80	3	100	13	25	15	46	1.82
209091--209168	41	1.9	41	94	0	138	14	25	15	44	1.84
209058--209167	21	5.8	20	71	17	99	12	24	17	45	1.83
209247--209317	33	2.2	33	92	0	115	47	18	22	11	1.80
209499--209553	22	2.5	22	81	0	74	20	16	40	23	1.91

Tables:   1   2   3   4