genome.fa.s7858.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007858.1 Hibiscus syriacus cultivar Beakdansim tig00110220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  969818

Tables:   1   2   3   4   

This is table  4  of  4  ( 442 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749419--749443	13	1.9	13	100	0	50	52	16	8	24	1.70
750719--750747	2	14.5	2	100	0	58	51	0	0	48	1.00
752959--752995	19	1.9	19	88	0	56	45	0	0	54	1.00
764579--764639	18	3.4	18	97	0	113	27	26	36	9	1.88
765058--765131	35	2.1	35	92	0	121	40	9	5	44	1.60
768388--768431	16	2.6	17	85	7	54	38	4	25	31	1.76
769206--769281	33	2.3	33	95	2	136	40	39	10	9	1.72
770393--770437	16	2.8	16	82	0	54	77	13	6	2	1.05
771851--771884	2	17.0	2	100	0	68	50	0	0	50	1.00
772359--772430	35	2.1	35	91	0	117	44	25	0	30	1.54
772970--773039	35	2.0	35	91	0	113	31	0	22	45	1.53
773332--773384	18	2.9	18	86	8	63	20	0	7	71	1.10
775258--775286	15	1.9	15	100	0	58	34	31	6	27	1.83
780308--780383	37	2.1	37	100	0	152	46	7	21	25	1.78
793166--793220	26	2.2	24	87	6	74	16	14	18	50	1.77
793521--793565	14	3.3	14	87	3	56	8	6	20	64	1.44
793488--793592	23	4.5	24	83	3	110	9	7	20	61	1.51
793535--793589	14	4.2	14	75	17	55	3	9	25	61	1.42
798241--798277	19	1.9	19	100	0	74	37	5	29	27	1.79
798589--798700	41	2.7	41	94	0	197	19	16	26	36	1.94
798626--798762	62	2.2	62	96	0	247	18	16	25	39	1.91
798589--798783	103	1.9	103	96	0	363	19	16	26	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798688--798821	41	3.3	41	90	3	200	21	18	24	35	1.96
798888--798952	21	3.1	21	77	4	78	43	18	20	18	1.89
798958--799003	19	2.4	19	85	3	56	21	17	30	30	1.96
798969--799005	19	1.9	19	94	0	65	21	16	29	32	1.95
801128--801157	3	10.0	3	100	0	60	33	0	0	66	0.92
801886--801921	13	2.8	13	95	4	65	30	5	0	63	1.17
804373--804410	12	2.9	13	84	11	51	39	0	5	55	1.23
818173--818215	17	2.5	18	81	11	54	65	0	4	30	1.13
821101--821151	26	2.0	26	84	0	66	49	0	3	47	1.20
821134--821504	186	2.0	183	91	4	604	42	3	8	45	1.51
822309--822333	2	12.5	2	100	0	50	0	52	0	48	1.00
839345--839420	36	2.1	36	85	7	100	47	1	3	47	1.29
839566--839603	20	1.9	20	88	0	58	21	26	10	42	1.85
839814--839852	17	2.3	17	100	0	78	41	12	0	46	1.42
841687--841726	21	1.9	21	84	0	53	37	15	2	45	1.59
841728--841878	81	1.9	81	88	2	232	37	9	12	40	1.75
860409--860486	29	2.7	29	87	2	111	32	14	11	42	1.81
863697--863893	108	1.8	108	89	0	295	41	11	6	40	1.66
865087--865164	39	2.0	39	87	5	113	41	3	2	52	1.33
877177--877219	21	2.1	20	86	4	59	74	6	11	6	1.21
878541--878608	4	17.0	4	77	11	59	72	0	5	22	1.06
878644--878928	35	8.1	35	78	9	255	47	7	2	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878612--878891	105	2.7	99	81	11	285	48	7	2	41	1.44
879614--880263	81	7.9	81	79	6	644	24	20	24	30	1.98
879636--880331	249	2.8	249	92	1	1118	25	20	24	30	1.98
885381--885423	21	2.1	20	86	4	59	74	6	11	6	1.21
886749--886816	4	17.0	4	77	11	59	72	0	5	22	1.06
886820--887143	73	4.5	69	79	9	278	48	7	2	42	1.43
886820--887144	35	9.1	35	77	11	277	48	7	2	42	1.43
886890--886984	13	7.6	13	64	20	51	49	8	0	42	1.33
886820--887107	108	2.7	106	83	5	341	48	7	2	41	1.43
888010--888049	2	20.0	2	100	0	80	50	0	0	50	1.00
889291--889320	2	15.0	2	100	0	60	50	0	0	50	1.00
889425--889472	21	2.2	23	85	7	64	58	0	8	33	1.28
890540--890590	22	2.4	22	90	3	77	37	5	0	56	1.23
890540--890598	22	2.7	22	82	7	59	40	5	0	54	1.23
891554--891626	35	2.1	35	100	0	146	35	26	21	16	1.94
892042--892069	5	5.6	5	100	0	56	82	0	17	0	0.68
894226--894255	15	2.0	15	93	0	51	0	23	46	30	1.52
900853--900978	50	2.5	51	76	10	134	17	32	26	23	1.96
901100--901140	10	4.1	10	84	12	57	31	26	0	41	1.56
901267--901599	111	3.0	111	94	0	567	36	7	11	44	1.69
904462--904575	51	2.2	51	90	0	183	22	28	32	16	1.96
904477--904602	51	2.5	51	83	3	148	24	27	30	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907264--907308	22	2.1	22	88	12	67	44	2	0	53	1.13
907293--907326	17	1.9	18	94	5	61	61	0	0	38	0.96
915867--915899	2	16.5	2	100	0	66	51	0	0	48	1.00
917108--917169	2	32.0	2	90	6	101	50	1	0	48	1.10
917520--917559	21	1.9	21	94	0	71	22	62	0	15	1.32
919269--919352	29	2.9	28	87	7	107	23	28	29	17	1.97
919423--919455	15	2.2	15	100	0	66	24	48	12	15	1.78
923551--923843	117	2.6	112	87	8	393	24	21	13	39	1.90
923667--924322	334	2.0	334	88	1	992	25	20	16	37	1.93
925204--925244	20	2.1	20	86	4	57	2	12	0	85	0.70
925204--925254	11	4.4	11	79	13	57	3	11	0	84	0.75
941103--941158	15	3.8	15	77	17	55	42	1	7	48	1.41
941940--941970	15	2.1	15	94	5	55	41	0	9	48	1.36
953315--953349	17	2.0	18	88	5	54	28	8	51	11	1.67
956673--956713	14	2.7	16	81	11	50	60	14	2	21	1.45
956824--956945	59	2.1	58	82	1	145	36	19	16	27	1.93

Tables:   1   2   3   4

The End!