genome.fa.s7858.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007858.1 Hibiscus syriacus cultivar Beakdansim tig00110220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  969818

Tables:   1   2   3   4   

This is table  2  of  4  ( 442 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209700--209893	20	9.6	20	82	5	221	19	19	25	35	1.95
209700--209893	60	3.2	60	83	0	253	19	19	25	35	1.95
209880--209962	21	4.0	21	73	6	78	25	16	24	33	1.96
209860--209958	42	2.4	43	77	11	100	21	18	23	37	1.94
210237--210280	23	2.0	21	86	8	61	25	0	0	75	0.81
219123--219235	14	7.5	15	75	20	103	46	0	2	51	1.15
219123--219193	26	2.5	27	86	11	90	52	0	0	47	1.00
219229--219302	22	3.2	23	76	14	71	28	0	17	54	1.44
219285--219445	32	5.7	32	70	27	157	36	0	11	52	1.38
219290--219462	54	3.2	54	95	0	312	36	0	10	52	1.37
219372--219414	22	2.0	22	95	0	77	34	0	11	53	1.37
219394--219542	79	1.9	80	94	4	266	33	0	12	53	1.44
219507--219548	22	1.9	22	100	0	84	38	2	9	50	1.48
219215--219557	187	1.8	188	94	1	618	35	0	11	52	1.41
219572--219630	31	1.9	31	85	0	82	44	10	3	42	1.55
219972--220028	30	2.0	30	86	6	82	45	0	3	50	1.18
219998--220044	19	2.4	20	79	13	53	40	0	8	51	1.33
225374--225512	75	1.9	75	81	6	174	45	12	15	27	1.81
226789--226818	2	15.0	2	92	0	51	46	0	3	50	1.18
227433--227818	196	2.0	196	97	1	729	34	4	18	41	1.71
229401--229434	2	17.0	2	93	0	59	50	2	0	47	1.16
231417--231459	21	2.2	20	84	16	54	30	13	13	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240843--240870	9	3.1	9	100	0	56	10	10	10	67	1.42
245274--245327	20	2.7	19	75	8	63	33	31	18	16	1.93
245376--245708	20	16.5	20	82	6	300	38	22	18	20	1.93
246570--246621	24	2.2	24	92	0	86	21	19	21	38	1.94
249033--249087	20	2.8	20	91	0	74	32	23	21	21	1.98
249106--249196	38	2.5	35	83	13	114	15	21	17	45	1.86
249132--249201	19	3.7	19	100	0	140	15	20	15	48	1.81
249407--249459	20	2.7	20	90	0	79	30	22	22	24	1.99
249466--249545	19	4.4	19	78	16	98	45	18	21	15	1.86
249557--249643	20	4.7	19	69	16	76	12	20	19	47	1.82
249744--249778	14	2.6	14	90	4	54	45	22	0	31	1.53
253200--253262	20	3.2	20	82	8	83	46	17	23	12	1.83
253247--253335	14	5.6	14	67	23	52	43	22	22	11	1.84
253260--253321	19	3.5	19	70	20	71	45	22	19	12	1.84
253226--253351	33	3.8	33	93	2	200	43	22	22	11	1.85
253376--253439	21	3.1	21	84	6	87	10	20	17	51	1.75
253383--253454	20	3.6	19	83	5	81	12	15	19	52	1.74
254006--254219	20	10.6	20	77	5	214	18	19	24	37	1.94
254008--254219	41	5.2	41	90	1	320	18	18	24	38	1.93
254233--254276	20	2.2	20	84	8	54	15	18	20	45	1.85
254248--254339	21	4.4	20	65	11	51	25	20	18	35	1.95
257167--257202	18	2.0	18	94	0	63	11	19	50	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258487--258613	20	7.1	19	70	20	103	44	19	23	11	1.84
258487--258608	33	3.5	33	85	7	154	45	19	22	11	1.82
258633--258694	21	3.1	21	75	9	67	12	20	14	51	1.75
259255--259482	20	11.2	20	77	4	233	19	18	24	37	1.94
259271--259482	41	5.2	41	87	1	311	19	18	24	38	1.93
259496--259539	20	2.2	20	88	8	63	13	18	22	45	1.84
262410--262445	18	2.0	18	94	0	63	11	19	50	19	1.77
271889--271939	21	2.4	21	80	6	59	47	1	0	50	1.12
273968--274055	36	2.5	36	85	5	108	32	9	15	42	1.79
280205--280369	87	1.9	87	100	0	330	28	16	21	33	1.95
285310--285347	3	12.7	3	94	0	67	68	28	2	0	1.03
285346--285430	3	28.3	3	100	0	170	67	0	0	32	0.91
300922--300976	26	2.1	26	100	0	110	25	10	21	41	1.86
304179--304220	17	2.5	17	100	0	84	23	42	0	33	1.55
305160--305225	29	2.2	29	89	2	96	43	3	0	53	1.16
305385--305467	30	2.8	30	86	0	121	62	2	4	30	1.28
308953--309101	74	2.0	74	96	0	271	32	12	8	46	1.71
313501--313537	19	1.9	19	94	0	65	35	21	8	35	1.83
314194--314236	19	2.3	19	88	11	63	37	4	0	58	1.19
314583--314649	21	3.2	21	93	0	107	16	26	17	38	1.91
314646--314858	20	10.6	20	92	0	345	39	19	18	22	1.92
315058--315115	18	2.8	22	66	28	54	29	36	15	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316815--316958	20	7.5	20	81	9	174	40	20	18	21	1.92
317005--317123	20	6.3	20	73	11	90	21	19	20	38	1.93
316967--317123	73	2.2	73	85	2	217	23	20	20	35	1.96
317622--317713	21	4.4	21	75	4	87	21	38	16	23	1.93
319078--319113	13	2.6	14	86	4	56	30	0	22	47	1.52
319067--319114	13	3.7	14	76	13	50	29	0	20	50	1.49
319215--319310	33	2.8	33	88	3	129	42	20	22	13	1.87
319248--319315	19	3.8	19	72	21	74	45	19	22	13	1.84
319319--319425	19	5.8	19	82	12	143	14	20	17	46	1.83
319325--319447	33	3.5	33	82	11	147	14	21	17	45	1.85
319431--319504	20	3.7	20	88	0	121	18	20	24	36	1.95
319432--319508	40	1.9	41	97	2	147	19	20	22	37	1.94
319430--319518	20	4.5	18	79	18	97	19	21	23	35	1.95
319430--319518	40	2.2	38	88	11	142	19	21	23	35	1.95
322879--322951	20	3.7	20	90	0	119	20	20	20	38	1.94
322866--322953	40	2.2	40	85	0	122	22	20	19	37	1.94
323504--323535	16	2.0	16	93	0	55	31	21	0	46	1.52
326898--326972	10	7.7	10	67	21	52	58	18	10	12	1.61
326902--326966	16	4.1	16	85	0	94	58	20	10	10	1.61
328055--328087	14	2.4	14	94	0	57	48	24	18	9	1.76
331213--331256	2	22.0	2	100	0	88	50	0	0	50	1.00
335805--335839	16	2.1	17	94	5	63	37	31	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345631--345707	37	2.1	37	82	4	93	46	1	5	46	1.33
345853--345890	20	1.9	20	88	0	58	21	26	10	42	1.85
348768--348824	21	2.7	21	86	0	87	21	38	31	8	1.84
349457--349503	18	2.6	18	89	3	67	70	6	4	19	1.26
349386--349599	115	1.9	115	94	2	376	46	7	5	39	1.57
349473--349696	96	2.3	97	87	8	341	47	8	4	38	1.56
349543--349575	15	2.1	17	88	11	52	33	15	6	45	1.70
352307--352388	41	2.0	41	95	0	146	50	10	7	31	1.65
356648--356733	24	3.6	24	77	0	73	24	13	16	45	1.84
367124--367159	2	18.0	2	100	0	72	50	0	50	0	1.00
368813--368860	24	2.0	25	91	4	80	64	4	0	31	1.12
368815--368866	24	2.2	23	86	10	70	69	1	0	28	0.99
369423--369492	21	3.2	22	72	13	63	30	2	1	65	1.15
370481--370547	18	3.8	18	80	4	82	40	2	2	53	1.31
370481--370559	18	4.5	17	77	4	77	39	2	3	54	1.32
370481--370559	35	2.3	35	88	0	113	39	2	3	54	1.32
372980--373037	21	2.8	21	89	0	89	22	36	18	22	1.95
374377--374424	19	2.5	20	86	3	62	50	6	14	29	1.67
375788--375887	21	4.8	21	97	0	182	21	40	19	20	1.92
377641--377707	34	2.0	33	85	8	91	61	13	2	22	1.46
377747--377790	13	3.3	13	80	3	52	65	13	4	15	1.41
378211--378277	33	2.0	33	91	5	109	22	20	44	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380014--380041	12	2.3	12	100	0	56	67	0	0	32	0.91
385878--385929	3	18.0	3	92	7	90	30	0	0	69	0.89
385987--386148	53	3.1	53	89	0	243	29	26	15	28	1.96
386925--386959	2	17.5	2	93	0	61	45	2	0	51	1.16
399522--399550	2	14.5	2	100	0	58	51	0	0	48	1.00
399712--400175	230	2.0	233	98	1	907	46	12	18	23	1.82
410845--411022	87	2.1	85	93	6	308	36	12	10	41	1.77
411671--411734	18	3.5	19	78	18	64	46	0	0	53	1.00
411689--411735	20	2.4	19	80	16	60	46	0	0	53	1.00
411692--411739	21	2.3	20	82	3	60	45	0	0	54	0.99

Tables:   1   2   3   4