genome.fa.s7895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007895.1 Hibiscus syriacus cultivar Beakdansim tig00110280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  561701

Tables:   1   2   3   

This is table  1  of  3  ( 353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3188--3236	22	2.3	22	82	10	66	40	0	0	59	0.98
8074--8181	24	4.5	24	79	9	107	27	12	17	41	1.86
8084--8178	47	2.0	47	84	8	122	28	13	17	40	1.88
23819--23917	10	10.3	9	71	12	72	16	26	27	30	1.96
23820--23917	19	5.1	19	77	14	69	15	26	27	30	1.96
23818--23892	29	2.6	29	89	8	116	17	26	26	29	1.97
23914--23971	5	10.8	5	78	14	62	18	51	22	6	1.70
23914--23978	22	3.0	22	100	0	130	18	49	23	9	1.76
24862--24934	31	2.3	32	83	2	94	15	26	32	26	1.95
31166--31243	9	8.3	9	76	8	75	15	25	29	29	1.96
31168--31241	19	3.9	19	83	11	89	14	22	31	31	1.94
31240--31297	5	10.8	5	76	20	55	20	51	20	6	1.70
31240--31304	22	3.0	22	95	0	121	20	49	21	9	1.76
32185--32261	31	2.5	31	82	2	100	14	25	31	28	1.95
32185--32308	63	2.0	63	82	6	153	16	27	29	26	1.97
33843--33878	2	18.5	2	94	5	65	50	0	0	50	1.00
38099--38144	23	2.0	23	83	4	58	52	8	6	32	1.58
38433--38496	3	20.3	3	90	3	83	35	1	1	60	1.15
41065--41115	25	2.0	25	81	7	59	50	3	1	43	1.31
44126--44205	37	2.3	35	84	6	99	38	0	3	57	1.17
44411--44452	18	2.3	18	87	4	57	40	0	2	57	1.12
50879--50929	24	2.1	24	85	3	66	37	5	0	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60480--60599	42	2.9	42	87	7	140	31	10	31	25	1.90
60508--60599	20	4.5	21	77	17	95	31	10	30	27	1.91
61226--61334	21	4.9	24	75	19	87	22	19	26	31	1.98
72570--72645	34	2.2	34	100	0	152	55	18	10	15	1.68
77918--77959	22	2.0	22	85	4	59	45	2	0	52	1.13
80018--80093	40	1.9	40	100	0	152	21	34	9	35	1.85
81019--81324	131	2.3	132	87	1	445	24	22	16	36	1.94
87841--87926	35	2.5	35	84	0	100	40	20	1	37	1.61
87895--87937	21	2.0	21	100	0	86	46	13	0	39	1.44
88060--88093	16	2.0	18	88	11	54	26	2	5	64	1.30
88563--88810	130	1.9	130	93	0	424	36	13	14	35	1.85
89215--89282	35	1.9	35	90	0	109	35	0	23	41	1.55
93945--94591	182	3.6	182	89	0	920	43	12	16	27	1.84
96772--96801	15	2.0	15	93	0	51	20	13	50	16	1.78
97157--97195	18	2.2	18	100	0	78	56	0	38	5	1.22
98666--98715	19	2.6	19	93	0	82	30	2	10	58	1.42
98979--99027	21	2.3	21	75	0	53	20	18	14	46	1.83
99519--99570	15	3.5	15	94	0	86	17	48	1	32	1.58
100721--100756	3	12.0	3	100	0	72	33	0	33	33	1.58
102011--102596	201	2.9	198	81	5	714	37	16	13	31	1.88
105757--106280	198	2.6	196	81	6	610	39	14	15	30	1.87
106358--106402	23	2.0	23	90	0	72	40	20	6	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106274--106436	87	1.9	87	89	0	254	34	14	10	41	1.80
108544--108609	33	2.0	33	82	5	80	48	24	3	24	1.65
108735--108802	20	3.3	21	87	4	95	19	30	25	25	1.98
108913--108971	31	1.9	31	89	0	91	42	6	8	42	1.61
108996--109038	22	2.0	22	95	0	77	51	11	0	37	1.39
109018--109098	32	2.5	32	90	7	137	55	8	0	35	1.31
109040--109093	14	3.6	14	72	18	54	59	3	0	37	1.15
108986--109354	86	4.4	86	76	14	331	53	10	0	35	1.36
109050--109612	54	9.9	54	84	8	671	53	11	0	34	1.40
109104--109508	32	13.7	32	78	17	448	54	12	0	33	1.38
109138--109186	22	2.2	22	85	3	62	55	12	0	32	1.37
109190--109232	22	2.0	22	100	0	86	51	13	0	34	1.42
109192--109240	22	2.2	22	88	3	71	55	14	0	30	1.40
109055--109642	122	5.1	118	86	8	619	53	12	0	33	1.41
109158--109687	90	6.1	86	75	17	364	53	12	0	33	1.42
109542--109584	22	2.0	22	95	0	77	48	13	2	34	1.56
109601--109673	22	3.3	22	70	19	62	54	16	0	28	1.42
109641--109822	45	3.9	47	78	12	182	50	3	0	46	1.20
109710--109822	30	3.9	30	93	3	178	48	0	0	50	1.06
109212--109784	230	2.4	229	81	10	570	52	10	0	36	1.39
109667--109799	15	8.5	15	81	11	160	51	1	0	47	1.10
114454--114485	6	5.3	6	100	0	64	31	15	53	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115282--116070	199	3.9	200	80	9	705	23	18	20	38	1.94
128689--128728	21	1.9	21	94	0	71	50	17	2	30	1.59
135640--135671	14	2.2	15	94	5	57	53	0	3	43	1.16
135912--135940	14	2.1	14	100	0	58	41	0	0	58	0.98
135916--135954	19	2.1	19	90	0	60	41	0	0	58	0.98
136316--136360	23	2.0	23	86	0	63	37	0	0	62	0.96
136940--136980	14	3.0	13	86	10	55	60	0	0	39	0.96
143164--143203	19	2.1	19	100	0	80	52	17	5	25	1.64
143401--143473	29	2.4	31	82	8	80	53	1	0	45	1.09
145393--145445	21	2.5	21	96	0	97	41	16	15	26	1.88
145875--145945	21	3.4	21	70	14	56	42	1	5	50	1.34
150708--150780	21	3.5	21	78	10	62	63	0	0	36	0.95
150737--150766	13	2.3	13	100	0	60	63	0	0	36	0.95
152982--153020	20	2.1	18	85	9	51	48	2	0	48	1.15
155093--155163	28	2.5	28	90	4	117	26	19	23	29	1.98
155223--155346	57	2.2	58	82	1	151	33	20	16	30	1.94
157366--157400	18	1.9	18	94	0	61	34	5	31	28	1.81
163947--163985	20	2.0	20	89	0	60	48	2	0	48	1.15
164096--164121	9	2.9	9	100	0	52	23	7	23	46	1.78
164572--164636	29	2.3	29	80	12	82	26	18	12	43	1.85
164623--164675	16	3.3	16	86	0	70	16	20	15	47	1.83
165042--165139	32	3.1	31	71	8	81	26	8	22	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166161--166185	13	1.9	13	100	0	50	36	32	0	32	1.58
167666--167696	6	5.2	6	100	0	62	32	0	0	67	0.91
175493--175520	14	2.0	14	100	0	56	28	21	14	35	1.92
176214--176291	35	2.2	35	90	0	120	46	16	5	32	1.69
178916--178963	18	2.8	17	80	3	60	37	6	27	29	1.81
182532--182584	21	2.5	21	93	0	88	28	30	22	18	1.98
182593--182799	21	10.0	21	73	13	169	21	19	24	34	1.96
182618--182796	42	4.3	41	97	1	315	20	18	24	35	1.95
183433--183628	21	9.4	21	70	19	135	37	23	18	20	1.94
183429--183649	42	5.3	42	94	1	392	36	24	19	20	1.95
183454--183674	21	10.6	21	74	13	188	35	25	19	19	1.95
185494--185525	2	16.5	2	93	6	57	50	0	0	50	1.00
191313--191365	21	2.5	21	90	0	88	18	24	22	33	1.97
191355--191421	20	3.3	20	91	0	98	31	23	20	23	1.98
191991--192029	20	2.0	20	94	0	69	51	20	17	10	1.74
193717--193812	21	4.6	21	67	12	63	21	13	33	31	1.92
193691--193813	63	2.0	63	83	3	158	21	14	33	30	1.94
194104--194186	21	4.0	21	79	6	87	22	37	16	22	1.94
194110--194201	42	2.2	42	88	0	130	23	36	17	21	1.94
194108--194201	21	4.5	21	74	11	77	23	37	18	21	1.94
196030--196065	18	2.0	18	94	0	63	19	2	22	55	1.56
198129--198155	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198332--198377	24	2.0	23	86	4	65	39	19	21	19	1.93
199294--199341	18	2.5	19	83	10	62	35	12	20	31	1.90
199334--199410	20	3.8	20	75	10	68	50	15	9	24	1.73
211432--211683	125	2.0	125	85	0	342	28	14	21	35	1.93
212397--212458	26	2.4	26	94	0	106	29	19	24	27	1.98
212987--213037	21	2.4	21	100	0	102	19	37	3	39	1.70
216319--216394	22	3.5	22	85	3	109	30	36	13	19	1.90
216773--216897	39	3.3	39	71	17	120	13	16	24	44	1.84
216756--216898	20	7.6	20	80	10	104	15	16	25	42	1.87
216776--216879	53	1.9	54	86	1	147	14	16	25	43	1.86

Tables:   1   2   3