genome.fa.s7895.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007895.1 Hibiscus syriacus cultivar Beakdansim tig00110280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  561701

Tables:   1   2   3   

This is table  3  of  3  ( 353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383791--383939	59	2.5	60	91	1	228	32	18	14	34	1.91
384286--384332	20	2.3	20	100	0	94	38	23	0	38	1.55
387660--387721	32	1.9	32	87	6	90	3	27	29	40	1.72
389757--389820	29	2.2	28	78	13	67	45	21	3	29	1.67
390696--390768	36	2.0	36	86	5	103	17	10	38	32	1.85
391013--391191	82	2.2	83	93	4	310	45	10	5	39	1.61
391703--391764	30	2.2	29	85	8	83	33	14	11	40	1.82
392866--392921	3	18.7	3	100	0	112	66	0	33	0	0.92
399092--399176	31	2.6	31	78	21	109	10	10	41	37	1.74
399097--399183	36	2.4	36	88	5	131	10	10	41	37	1.73
399702--399748	18	2.7	18	90	3	69	27	25	8	38	1.85
399796--399830	2	17.5	2	100	0	70	48	0	0	51	1.00
403313--403368	28	2.0	28	100	0	112	39	10	17	32	1.84
404748--405010	131	2.0	131	100	0	526	26	18	26	28	1.98
406016--406071	24	2.3	24	100	0	112	37	16	17	28	1.91
411834--411861	2	14.0	2	100	0	56	50	0	0	50	1.00
412157--412206	17	3.1	17	68	26	54	20	6	22	52	1.68
413073--413121	10	4.9	10	78	7	55	77	2	10	10	1.07
413150--413234	2	45.0	2	78	15	83	55	0	1	43	1.07
413563--413667	37	2.8	37	86	0	147	30	14	15	40	1.87
414398--415561	106	11.0	105	89	3	1662	23	17	24	34	1.96
416379--416477	22	4.5	22	96	0	180	21	14	27	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417120--417183	13	5.2	12	78	10	58	0	15	4	79	0.89
417139--417189	24	2.1	25	82	10	61	0	21	3	74	0.98
420287--420335	10	4.9	10	78	7	55	77	2	10	10	1.07
420274--420362	9	9.1	9	71	18	54	76	2	6	14	1.09
420277--420362	30	2.9	28	72	19	75	76	2	6	13	1.08
420363--420417	2	28.0	2	78	10	60	56	0	1	41	1.10
420343--420477	39	3.4	38	76	9	146	64	0	1	33	1.08
420343--420479	41	3.4	40	80	10	147	64	0	1	33	1.08
420789--420893	37	2.8	37	86	0	147	31	13	15	40	1.85
422337--422397	30	2.0	30	96	0	113	29	19	3	47	1.65
425111--425170	20	3.0	20	90	0	93	43	11	18	26	1.84
426966--427027	15	4.2	14	76	11	70	32	6	20	40	1.78
427110--427172	23	2.7	23	82	0	81	20	17	26	34	1.95
427110--427200	46	2.0	46	84	0	119	20	16	25	37	1.93
427129--427216	23	3.9	23	77	4	90	18	17	26	38	1.92
428496--428520	3	8.3	3	100	0	50	64	0	0	36	0.94
443835--443889	23	2.4	23	78	6	58	58	14	14	12	1.64
445143--445183	21	1.9	22	90	5	66	75	0	4	19	0.98
445810--445872	19	3.2	19	75	4	54	55	12	0	31	1.37
445775--445972	64	2.8	69	80	14	219	57	12	1	28	1.44
445830--445993	76	2.2	75	87	3	231	56	10	2	30	1.47
451224--451266	22	2.0	21	81	4	50	58	6	2	32	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459719--459798	26	2.7	30	77	18	105	18	16	28	36	1.93
459730--459792	26	2.4	26	97	0	117	19	17	25	38	1.93
461364--461444	22	3.4	23	75	20	67	45	1	0	53	1.08
461360--461425	25	2.7	25	79	11	75	48	1	0	50	1.10
461544--461612	19	3.6	19	73	21	63	47	1	2	47	1.25
461575--461686	27	4.5	23	69	21	57	50	2	0	45	1.21
461643--461702	24	2.5	23	78	5	57	50	3	0	46	1.18
461728--461774	22	2.1	23	88	4	69	53	0	2	44	1.12
461736--461779	22	2.0	22	82	8	54	54	0	2	43	1.12
462462--462515	22	2.5	22	75	3	56	18	14	9	57	1.64
462999--463116	58	2.0	58	93	0	200	41	12	5	39	1.68
463699--463727	2	14.5	2	100	0	58	48	0	0	51	1.00
475557--475595	14	2.8	14	88	0	60	33	10	5	51	1.58
475675--475743	32	2.2	32	89	0	102	17	26	31	24	1.97
475687--475743	15	3.7	15	75	9	60	15	26	33	24	1.95
477268--477298	9	3.4	9	100	0	62	90	0	0	9	0.46
477982--478118	60	2.3	60	90	0	211	32	15	16	35	1.90
482266--482296	16	1.9	16	93	0	53	41	3	0	54	1.16
482618--482705	44	2.0	42	91	4	140	50	0	0	50	1.00
485314--485354	21	2.0	21	90	0	64	14	0	31	53	1.41
486500--486560	16	3.8	16	93	0	104	60	21	11	6	1.53
487640--487690	24	2.1	24	88	0	75	54	19	11	13	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488799--488841	23	2.0	21	86	9	59	34	6	2	55	1.39
494123--494342	110	2.0	110	99	0	431	30	20	15	33	1.93
503576--503685	24	4.6	24	76	10	102	47	17	15	20	1.83
503580--503671	12	7.8	12	71	16	66	47	18	15	18	1.82
503578--503668	47	1.9	48	84	10	125	48	17	15	18	1.82
504764--504798	18	1.9	18	88	0	52	28	17	0	54	1.43
508217--508326	24	4.6	24	76	10	111	48	17	14	20	1.81
508221--508312	12	7.8	12	71	16	66	47	18	15	18	1.82
508219--508326	47	2.3	47	82	12	132	48	17	14	19	1.82
510755--510797	13	3.3	13	93	0	77	18	23	41	16	1.89
510774--510819	18	2.6	18	92	0	74	13	19	50	17	1.78
510763--510814	13	3.6	13	75	22	50	15	19	48	17	1.82
514785--514853	23	3.0	23	74	4	59	24	21	23	30	1.99
518263--518322	20	2.8	20	80	10	66	31	20	23	25	1.98
521779--521819	19	2.2	20	78	13	50	24	2	2	70	1.11
524891--525222	165	2.0	167	97	2	634	26	22	22	28	1.99
527427--527485	21	2.8	21	84	0	73	47	23	6	22	1.75
527719--527754	10	3.6	10	88	0	54	13	16	16	52	1.74
527717--527754	20	1.9	20	94	0	67	13	15	15	55	1.70
527762--527829	23	2.9	23	79	12	84	57	17	13	11	1.65
528093--528121	14	2.1	14	100	0	58	55	17	13	13	1.70
530036--530082	22	2.1	22	92	0	76	14	44	21	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530471--530521	20	2.5	20	80	0	57	19	13	17	49	1.80
532010--532108	42	2.4	42	87	3	146	30	33	19	17	1.94
532223--532272	21	2.4	21	82	0	64	22	14	30	34	1.93
532679--532755	21	3.7	21	87	3	111	22	35	18	24	1.96
534241--534315	20	3.8	20	90	0	105	42	20	18	18	1.89
534345--534405	20	3.0	20	83	9	79	13	18	22	45	1.83
534370--534493	49	2.5	49	86	0	185	23	20	19	37	1.95
536976--537030	24	2.3	24	90	3	94	43	18	16	21	1.88
536979--537043	24	2.8	24	83	2	60	41	18	16	23	1.90
537950--538117	20	8.4	20	68	16	89	33	13	23	29	1.92
537950--538262	40	7.7	40	70	14	142	31	13	26	29	1.93
537965--538117	60	2.5	60	77	5	157	32	13	24	28	1.94
538060--538157	41	2.4	40	84	5	133	29	14	26	29	1.95
538069--538264	20	9.6	20	72	17	109	28	13	28	30	1.94
538183--538245	21	3.0	20	79	9	72	26	11	31	30	1.91
537961--538260	102	3.0	102	82	7	303	31	13	26	28	1.94
551730--551785	21	2.7	20	86	5	67	28	14	26	30	1.95
558274--558367	48	1.9	49	80	6	111	23	12	26	37	1.91
558327--558416	32	2.8	31	80	11	101	23	11	27	37	1.89
559128--559249	16	7.6	16	67	5	66	13	10	28	46	1.77
559190--559251	32	1.9	32	90	6	99	8	8	29	54	1.58
559468--559541	22	3.3	20	70	26	60	47	1	1	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559552--559607	23	2.7	19	78	19	67	39	3	7	50	1.47
559584--559637	19	3.1	18	77	15	60	42	0	1	55	1.10
561547--561698	2	80.5	2	78	11	142	0	60	0	39	0.97

Tables:   1   2   3

The End!