genome.fa.s7895.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007895.1 Hibiscus syriacus cultivar Beakdansim tig00110280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  561701

Tables:   1   2   3   

This is table  2  of  3  ( 353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216726--216898	73	2.4	72	92	2	276	14	16	24	44	1.85
219347--219467	20	5.6	20	77	15	125	42	23	18	14	1.87
219391--219434	14	3.1	14	83	0	61	50	25	15	9	1.74
219350--219479	68	1.9	69	92	4	219	44	23	18	13	1.85
219512--219790	20	14.4	20	79	11	276	18	21	22	37	1.94
219550--219654	56	1.9	54	88	3	156	17	20	23	38	1.93
219532--219750	76	2.9	76	93	1	352	17	21	22	37	1.94
219494--219791	96	3.1	95	83	8	399	18	21	22	37	1.94
220265--220351	21	4.2	20	71	14	68	20	35	19	24	1.96
220273--220355	42	2.0	42	83	4	105	21	37	19	21	1.94
221733--221768	14	2.6	14	90	0	54	30	0	22	47	1.52
221894--221947	14	3.5	14	73	22	54	44	20	24	11	1.83
221874--221977	33	3.1	33	90	4	147	42	21	24	12	1.87
221907--221975	19	3.8	19	73	21	76	46	18	21	13	1.83
222044--222119	33	2.3	34	93	2	136	10	25	19	44	1.82
222044--222128	33	2.5	33	90	1	134	11	24	18	44	1.83
222111--222204	20	4.7	20	93	2	154	18	22	24	35	1.96
224421--224450	3	10.0	3	100	0	60	0	33	0	66	0.92
224641--224692	24	2.2	24	82	0	59	36	21	19	23	1.95
225519--225626	20	5.4	20	83	4	128	25	18	24	32	1.97
225560--225686	40	3.2	40	89	4	186	22	18	21	38	1.93
225535--225666	60	2.2	60	83	5	160	21	18	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225573--225689	20	5.8	20	86	7	166	22	17	19	40	1.92
228719--228750	12	2.7	12	95	0	55	6	50	15	28	1.68
232753--232844	46	2.0	46	95	0	166	32	19	10	36	1.87
234564--234622	22	2.7	23	79	10	61	55	1	3	38	1.26
235049--235173	38	3.3	38	92	2	198	39	40	9	11	1.74
235743--235790	21	2.3	21	88	0	69	62	4	12	20	1.46
235944--235990	17	2.8	16	81	12	58	36	8	25	29	1.86
235979--236089	33	2.8	41	70	28	103	27	9	25	38	1.85
235998--236064	33	2.0	33	97	0	125	26	5	31	35	1.81
237201--237248	21	2.3	21	92	0	78	60	4	10	25	1.47
237386--237430	18	2.6	17	89	3	63	37	4	28	28	1.77
237386--237431	17	2.6	18	89	3	67	36	6	28	28	1.82
240409--240443	8	4.4	8	92	0	61	51	0	14	34	1.42
241483--241543	7	8.4	7	92	7	104	1	29	0	68	0.99
241485--241545	3	18.3	3	78	18	59	1	29	0	68	0.99
242679--242742	21	3.0	21	77	4	74	23	25	21	29	1.99
244807--244856	3	17.0	3	84	12	50	64	2	0	34	1.05
244822--244866	23	2.0	23	86	4	65	68	4	0	26	1.08
244807--244857	19	2.7	19	78	0	57	64	1	0	33	1.05
245039--245103	2	32.5	2	100	0	130	49	0	0	50	1.00
247492--247529	18	2.1	18	100	0	76	21	47	10	21	1.80
257859--257904	16	2.9	15	78	9	56	41	2	13	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258739--258776	18	2.1	19	90	5	60	52	21	5	21	1.66
263726--263797	24	3.0	24	85	0	99	50	18	12	19	1.78
263728--263797	12	5.8	12	70	6	52	50	18	12	18	1.78
263726--263834	48	2.3	47	80	6	112	46	16	16	20	1.84
264963--265003	18	2.3	18	86	0	55	26	17	2	53	1.56
267097--267140	2	22.0	2	100	0	88	50	0	0	50	1.00
267454--267487	17	1.9	18	88	5	52	52	0	2	44	1.16
271091--271414	138	2.4	137	76	7	327	23	24	16	35	1.94
271518--271551	17	2.0	17	94	0	59	32	11	17	38	1.86
271752--271792	15	2.7	15	100	0	82	4	29	12	53	1.58
279025--279123	21	5.0	21	78	13	102	25	21	28	25	1.99
280183--280223	21	2.0	21	85	0	55	29	2	24	43	1.67
280231--280264	17	2.0	17	88	0	50	29	0	20	50	1.49
284634--284671	18	2.2	17	90	4	58	63	0	0	36	0.95
284757--284818	30	2.0	31	81	9	74	48	4	4	41	1.46
286734--286774	21	2.0	21	85	0	55	12	46	17	24	1.82
289005--289036	13	2.4	14	85	15	50	28	0	6	65	1.16
292642--292728	35	2.5	34	80	12	97	55	10	8	26	1.61
295964--295998	15	2.3	15	100	0	70	14	22	34	28	1.93
295982--296029	18	2.7	18	96	0	87	14	25	37	22	1.92
296167--296196	3	10.0	3	100	0	60	66	33	0	0	0.92
302070--302222	80	1.9	80	95	2	281	35	7	18	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302511--302545	15	2.3	15	90	0	52	14	17	34	34	1.90
302697--302723	3	9.0	3	100	0	54	66	33	0	0	0.92
303502--303723	111	2.0	112	95	0	401	45	10	8	36	1.68
303785--303823	18	2.2	18	90	4	62	64	2	2	30	1.21
306174--306384	101	2.1	103	83	7	261	30	18	13	36	1.90
308036--308075	20	2.0	20	100	0	80	50	5	10	35	1.58
311103--311161	19	3.1	19	82	2	64	45	0	3	50	1.18
318482--318639	21	7.8	20	70	7	77	37	25	17	18	1.93
318607--318835	20	11.4	20	83	5	248	36	25	17	19	1.94
319528--319574	24	2.0	24	87	8	69	25	14	21	38	1.92
319749--319773	12	2.1	12	100	0	50	72	0	28	0	0.86
322058--322237	33	5.2	34	75	16	156	46	18	21	13	1.84
322072--322257	19	10.4	19	76	19	204	46	17	21	14	1.84
322058--322237	86	2.1	84	85	12	233	46	18	21	13	1.84
322072--322275	53	3.8	53	94	3	349	45	18	22	14	1.85
322266--322400	52	2.6	52	97	0	252	15	22	17	44	1.86
322266--322400	19	7.6	19	79	15	164	15	22	17	44	1.86
322507--322543	14	2.6	14	91	0	65	45	21	0	32	1.52
324466--324605	19	7.6	19	80	8	155	45	22	19	12	1.83
324482--324583	33	2.9	35	88	7	136	47	22	19	10	1.80
324617--324643	14	1.9	14	100	0	54	7	14	29	48	1.71
324601--324695	33	2.9	33	89	6	147	8	14	27	49	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324601--324729	19	7.3	19	77	17	134	9	14	27	48	1.75
324774--325055	93	3.1	93	98	1	541	45	19	12	22	1.83
326752--326843	41	2.5	36	81	16	109	45	18	23	11	1.83
326752--326865	19	6.1	19	74	15	103	45	18	23	12	1.83
326877--326933	14	3.7	14	75	20	60	8	22	22	45	1.80
326861--326941	33	2.5	33	93	0	135	8	20	22	48	1.77
326918--326993	21	3.7	21	83	3	109	11	25	17	46	1.82
326917--326994	41	1.9	41	97	0	147	12	25	16	44	1.83
327073--327143	33	2.2	33	94	0	124	47	16	23	11	1.79
327502--327694	20	9.6	20	84	5	237	19	18	26	35	1.95
329046--329085	21	1.9	21	94	0	71	32	15	10	42	1.79
331929--332438	6	85.0	6	96	3	956	50	16	0	33	1.46
333377--333408	16	1.9	17	93	6	57	46	15	6	31	1.71
333641--333704	31	2.1	31	93	0	110	39	15	6	39	1.73
336685--337139	227	2.0	226	96	2	851	44	12	10	31	1.77
340162--340238	24	3.2	24	74	3	75	20	16	16	45	1.85
340885--341036	76	2.0	75	96	3	279	21	17	26	34	1.95
349697--349766	11	6.3	11	79	9	70	12	2	17	67	1.35
349699--349751	23	2.4	22	87	3	79	13	1	15	69	1.27
349697--349766	34	2.1	33	94	2	122	12	2	17	67	1.35
349959--350019	22	2.8	23	80	9	67	16	4	21	57	1.58
349912--350094	74	2.5	72	87	7	269	19	4	19	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353702--353764	29	2.2	29	85	5	83	17	9	23	49	1.76
353727--353811	40	2.1	40	89	4	127	20	8	18	52	1.70
354144--354255	35	3.2	35	81	5	136	38	0	19	41	1.58
359524--359939	208	2.0	208	98	1	800	23	16	19	40	1.91
360867--360915	24	2.0	24	88	0	71	26	14	16	42	1.86
362614--362644	14	2.1	15	94	5	55	45	0	0	54	0.99
368674--368711	19	2.0	19	85	10	51	18	10	15	55	1.68
376615--376658	3	15.0	3	95	4	81	65	0	0	34	0.93
378444--378539	16	5.9	16	67	2	66	40	31	13	14	1.85
378440--378539	32	3.1	32	82	2	128	41	31	13	15	1.84

Tables:   1   2   3