genome.fa.s7897.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007897.1 Hibiscus syriacus cultivar Beakdansim tig00110283_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  862109

Tables:   1   2   3   4   

This is table  4  of  4  ( 426 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713794--713916	49	2.5	47	82	12	133	23	26	32	17	1.97
713810--713916	49	2.2	48	85	8	137	23	27	31	17	1.97
730665--730694	7	4.1	7	91	8	51	30	0	0	70	0.88
733803--733869	35	2.0	33	82	11	82	47	1	1	49	1.19
737930--737971	19	2.3	18	88	12	59	71	0	19	9	1.13
738064--738106	20	2.4	18	79	20	54	62	6	0	30	1.21
740708--740782	30	2.5	31	86	4	100	34	13	18	33	1.90
741385--741411	2	13.5	2	100	0	54	48	0	0	51	1.00
745813--745861	15	3.3	14	77	11	53	22	0	18	59	1.38
755118--755188	31	2.3	31	100	0	142	40	15	23	19	1.90
757018--757159	64	2.2	63	86	4	196	32	19	23	24	1.98
757147--757204	20	2.6	22	89	10	84	31	20	22	25	1.98
758721--758756	15	2.4	15	100	0	72	47	8	19	25	1.77
758808--760077	473	2.7	470	82	7	1404	32	13	18	35	1.90
760069--760125	27	2.1	27	80	6	62	43	17	5	33	1.71
760121--760219	52	1.9	52	87	0	144	33	12	12	42	1.79
767599--767629	14	2.2	14	100	0	62	54	25	0	19	1.44
767691--767746	29	1.9	29	92	7	96	50	12	14	23	1.77
772284--772371	29	3.0	29	98	0	167	48	12	13	25	1.77
772288--772381	29	3.5	24	77	16	64	47	10	13	27	1.76
774157--774211	24	2.3	24	96	0	101	21	34	32	10	1.89
776065--776104	21	1.9	21	84	0	53	60	2	2	35	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777897--778498	197	3.1	197	84	1	760	38	5	10	45	1.62
781759--782082	179	1.8	181	82	8	421	36	10	10	42	1.74
781759--782141	179	2.1	177	80	8	409	36	10	9	42	1.73
783901--783992	42	2.2	41	84	3	112	22	8	13	55	1.65
784205--784274	24	3.0	22	78	13	61	47	1	0	51	1.09
784231--784277	22	2.1	22	88	4	67	44	2	0	53	1.12
784345--784384	20	2.2	20	86	13	59	55	0	0	45	0.99
784366--784424	22	2.8	21	82	10	66	50	0	1	47	1.11
800900--800942	23	1.9	23	90	4	70	39	0	2	58	1.11
815705--815760	28	2.0	29	82	3	69	21	12	25	41	1.88
831510--831633	59	2.1	59	90	0	194	37	4	16	41	1.67
831627--831860	29	8.1	29	83	8	164	32	4	17	45	1.68
831615--831860	88	2.8	83	80	8	269	31	4	18	45	1.68
831627--831860	58	4.1	57	83	7	269	32	4	17	45	1.68
831655--831868	113	1.9	116	85	7	294	32	4	16	46	1.68
848471--848542	19	3.6	21	88	5	78	41	23	11	23	1.86
848490--848581	19	4.7	19	81	8	96	34	23	9	31	1.88
848431--848581	20	7.6	19	74	9	88	35	26	11	26	1.90
848431--848582	40	3.8	40	74	10	123	36	26	11	26	1.90
848555--848601	18	2.5	19	82	6	60	29	23	14	31	1.95
848688--848732	22	2.0	22	83	8	56	26	37	6	28	1.82
848730--848767	16	2.5	15	84	12	51	31	2	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
848822--848977	43	3.7	43	78	12	135	31	20	20	27	1.97
851757--851800	20	2.2	20	91	0	70	38	25	20	15	1.92
851711--851815	54	1.9	54	84	0	138	30	21	20	26	1.98
851870--851908	20	2.0	20	94	0	69	17	17	20	43	1.88
851982--852102	37	3.5	37	70	21	118	50	18	1	29	1.56
851970--852127	64	2.5	64	95	1	280	50	18	1	29	1.57
853490--853618	42	3.1	42	86	3	170	25	18	34	21	1.96
853491--853608	21	5.6	21	76	3	103	25	17	34	22	1.96
853904--854023	63	1.9	63	86	3	170	30	34	13	21	1.92
853924--854063	63	2.2	64	84	5	178	30	35	14	20	1.92
855747--855819	20	3.7	20	90	0	119	46	20	20	12	1.82
855838--855881	20	2.2	20	87	0	61	13	13	20	52	1.74
856206--856252	22	2.1	22	92	0	76	21	10	44	23	1.83
856209--856259	22	2.3	21	87	9	75	17	13	45	23	1.84
856375--856436	20	3.2	20	88	6	92	19	9	24	46	1.79
856429--856474	21	2.2	21	96	0	83	41	17	21	19	1.90
859310--859472	21	7.9	21	74	13	115	20	19	23	36	1.95
859310--859516	42	5.0	41	80	10	190	21	20	22	34	1.97
859409--859513	21	5.0	21	87	6	142	21	23	21	32	1.98
860634--860780	21	7.0	21	70	20	103	36	20	19	23	1.95
860634--860812	42	4.3	40	79	13	168	36	22	19	21	1.95
860701--860837	21	6.6	21	73	9	120	35	24	18	21	1.95

Tables:   1   2   3   4

The End!