genome.fa.s7897.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007897.1 Hibiscus syriacus cultivar Beakdansim tig00110283_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  862109

Tables:   1   2   3   4   

This is table  2  of  4  ( 426 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243793--243904	59	1.9	58	96	1	206	33	15	10	40	1.82
247927--248107	59	3.1	57	80	10	186	40	3	20	35	1.69
253640--253672	17	1.9	17	88	11	50	63	12	6	18	1.48
258310--258373	2	32.0	2	100	0	128	50	0	0	50	1.00
260004--260060	22	2.6	23	83	5	73	33	0	1	64	1.04
263028--263059	3	10.7	3	100	0	64	34	0	34	31	1.58
282747--282773	2	13.5	2	100	0	54	48	0	0	51	1.00
297530--297596	31	2.2	31	83	5	82	26	11	7	53	1.64
316427--316468	21	2.2	19	87	12	59	30	19	30	19	1.96
317667--317707	21	2.0	21	85	9	57	39	7	17	36	1.77
317920--317977	21	2.8	19	75	14	53	55	3	3	37	1.34
318120--318187	25	2.7	26	81	9	95	48	11	8	30	1.70
320765--320803	10	3.6	10	81	18	51	56	0	0	43	0.99
320765--320814	23	2.2	23	100	0	100	54	0	0	46	1.00
320765--320834	23	3.0	23	89	4	88	55	2	0	41	1.14
320847--320877	14	2.1	15	94	5	55	48	0	0	51	1.00
320842--320884	16	2.8	15	82	13	52	46	0	2	51	1.13
322223--322260	16	2.4	16	95	0	67	44	0	26	28	1.54
322971--323022	27	2.0	26	85	14	72	51	11	13	23	1.73
323073--323106	13	2.5	14	90	4	52	64	0	2	32	1.08
323075--323112	13	3.0	13	88	3	51	60	0	5	34	1.19
323287--323311	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325251--325282	14	2.1	16	88	11	50	15	15	18	50	1.79
339979--340019	20	2.0	21	85	4	57	39	2	0	58	1.11
345433--345482	24	2.0	25	85	11	68	54	0	4	42	1.19
359363--359408	3	15.3	3	100	0	92	67	0	0	32	0.91
360155--360179	2	12.5	2	100	0	50	52	0	0	48	1.00
362123--362249	59	2.1	59	84	11	161	54	11	1	33	1.45
363193--363229	15	2.4	16	86	13	60	51	0	0	48	1.00
363421--363524	30	3.2	31	74	18	79	56	2	1	38	1.25
363748--363802	21	2.6	21	94	0	92	18	21	29	30	1.97
363820--364017	21	9.6	21	78	8	210	33	26	20	19	1.96
363841--363992	40	3.8	40	96	1	268	34	25	19	19	1.96
364026--364080	21	2.6	22	85	8	78	20	21	29	29	1.98
366718--366783	27	2.4	27	92	0	105	33	16	24	25	1.96
367332--367405	32	2.3	32	85	0	103	31	18	21	28	1.97
368831--368886	23	2.5	22	77	8	58	48	1	0	50	1.11
368952--369026	37	2.0	37	89	5	116	29	9	20	41	1.83
369560--369600	18	2.3	18	91	4	66	29	4	2	63	1.28
369662--369883	111	2.0	111	94	0	390	36	7	9	45	1.66
373757--373793	17	2.1	18	90	5	58	54	0	0	45	1.00
387137--387191	13	4.4	13	75	9	51	45	1	0	52	1.11
387180--387235	20	2.8	19	78	7	58	46	1	0	51	1.11
387200--387238	20	2.0	20	89	0	60	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389975--390010	2	18.0	2	100	0	72	50	0	0	50	1.00
390322--390392	32	2.2	32	87	5	99	26	19	21	32	1.97
390322--390403	32	2.5	33	84	7	89	23	19	24	32	1.97
391500--391583	43	2.0	43	81	9	100	40	7	20	32	1.79
392138--392190	2	26.0	2	88	3	79	49	5	0	45	1.26
392538--392601	23	2.8	23	85	0	101	32	26	25	15	1.95
394167--394224	20	2.7	20	86	10	71	27	22	18	31	1.97
400644--400672	2	14.5	2	100	0	58	51	0	0	48	1.00
401395--401484	24	3.8	24	75	4	83	47	13	14	24	1.80
403765--403795	16	1.9	16	93	0	53	22	9	16	51	1.73
405770--405798	3	9.7	3	100	0	58	68	0	31	0	0.89
412046--412106	20	3.4	16	76	17	50	31	1	0	67	1.01
413710--413764	28	2.0	28	82	7	67	38	14	10	36	1.81
414225--414339	42	2.8	41	91	1	185	17	16	19	46	1.84
414538--414705	28	6.0	28	69	21	104	45	0	1	52	1.11
414585--414629	23	2.0	23	90	0	72	53	0	2	44	1.13
415141--415174	17	2.0	17	88	0	50	41	0	2	55	1.15
417385--417442	27	2.2	27	96	3	109	51	10	8	29	1.65
434231--434291	18	3.4	18	73	24	65	3	14	32	49	1.60
434230--434291	17	3.4	19	77	18	78	3	14	32	50	1.59
437795--437936	60	2.4	60	75	3	144	39	11	15	33	1.83
441313--441359	19	2.4	20	85	7	78	38	4	25	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441781--441857	21	3.7	21	76	10	86	18	18	23	40	1.91
441802--441894	20	4.6	20	75	7	80	22	19	23	34	1.96
441920--441956	19	1.9	19	88	0	56	21	13	29	35	1.92
442789--442825	20	1.9	19	89	10	58	21	24	10	43	1.84
443764--443826	2	31.0	2	96	3	117	49	0	1	49	1.10
451192--451329	60	2.3	60	83	1	179	33	16	18	31	1.94
452765--452880	21	5.6	21	69	10	60	32	27	18	21	1.96
452868--453096	20	11.4	20	88	1	253	37	25	18	19	1.94
453786--453832	24	2.0	24	87	8	69	25	14	21	38	1.92
454006--454030	12	2.1	12	100	0	50	72	0	28	0	0.86
456312--456562	33	7.2	33	71	17	186	46	17	22	13	1.83
456326--456562	53	4.5	53	97	1	440	46	17	22	13	1.83
456326--456568	19	13.7	19	77	18	274	45	17	22	13	1.84
456312--456491	86	2.1	84	86	12	242	46	18	22	12	1.82
456326--456562	105	2.2	106	96	0	440	46	17	22	13	1.83
456539--456654	53	2.2	52	86	3	160	18	23	18	38	1.93
456577--456664	19	4.8	19	82	14	123	13	22	15	47	1.81
456751--456790	14	2.8	14	88	3	62	42	22	0	35	1.54
458698--458870	19	9.6	19	76	12	150	46	22	20	10	1.82
458792--458848	14	3.7	14	75	20	51	43	22	22	10	1.84
458773--458865	33	2.8	33	93	0	159	46	20	21	11	1.82
458866--458975	19	6.3	18	73	20	92	9	16	28	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458882--458940	14	3.9	14	76	20	64	6	16	28	47	1.72
458866--458959	33	2.8	33	93	0	161	7	17	27	47	1.74
459023--459230	93	2.4	87	85	10	266	46	19	12	21	1.83
459211--459241	11	2.8	11	100	0	62	74	16	9	0	1.07
459222--459492	93	2.9	93	99	0	533	46	18	13	21	1.83
461177--461273	20	5.2	20	72	18	100	46	17	24	11	1.81
461175--461239	21	3.1	21	82	4	96	47	15	26	10	1.78
461224--461280	14	3.7	14	75	20	60	43	22	24	8	1.81
461175--461297	33	3.5	33	90	8	165	46	18	24	10	1.81
461314--461370	14	3.7	14	70	20	51	10	24	21	43	1.83
461298--461377	33	2.4	33	93	0	133	10	21	21	47	1.79
461358--461431	21	3.5	21	80	7	96	14	20	17	47	1.83
461511--461581	33	2.2	33	92	5	117	49	16	22	11	1.78
461961--462152	20	9.6	20	85	4	244	19	18	27	34	1.95
467084--467177	49	1.9	49	91	0	152	27	13	11	46	1.78
467926--467956	7	4.4	7	100	0	62	70	16	0	12	1.16
470857--470912	20	2.8	20	81	13	78	39	21	12	26	1.89
473457--473482	7	3.7	7	100	0	52	57	0	0	42	0.98
478211--478237	13	2.1	13	100	0	54	55	0	0	44	0.99
478594--478645	26	1.9	28	85	14	74	40	1	5	51	1.37
478779--478814	2	18.0	2	100	0	72	50	0	0	50	1.00
482790--482821	15	2.1	15	94	0	55	28	18	12	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483536--483574	19	2.1	18	85	4	51	43	5	5	46	1.48
485796--485844	20	2.5	20	83	6	55	55	12	2	30	1.48
493392--493462	35	2.0	35	97	0	133	23	8	14	53	1.68
494838--496160	661	2.0	661	99	0	2592	26	12	20	40	1.88
498579--498610	6	5.3	6	100	0	64	46	37	0	15	1.46
499163--499218	20	2.8	20	76	15	53	35	19	0	44	1.51
501280--501341	2	31.0	2	100	0	124	50	0	0	50	1.00
501912--501945	11	3.1	11	82	0	50	14	0	14	70	1.17
503698--503729	16	1.9	17	93	6	57	37	3	21	37	1.70
513553--513613	29	2.1	29	96	0	113	16	14	42	26	1.87

Tables:   1   2   3   4