genome.fa.s7906.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007906.1 Hibiscus syriacus cultivar Beakdansim tig00110300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  551901

Tables:   1   2   3   

This is table  2  of  3  ( 282 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273806--273852	14	3.8	13	78	15	55	70	8	0	21	1.14
273855--273896	20	2.1	20	82	8	50	73	4	4	16	1.17
273923--273950	2	14.0	2	100	0	56	50	0	0	50	1.00
273988--274026	18	2.2	18	90	0	60	74	2	2	20	1.06
275115--275167	20	2.6	20	77	11	54	73	1	3	20	1.08
275237--275552	37	8.6	36	81	12	315	44	6	2	46	1.43
275237--275540	36	8.4	37	79	13	285	44	6	2	46	1.42
275193--275552	37	9.8	37	78	14	302	45	6	2	45	1.43
281254--281305	24	2.2	24	96	0	95	15	48	9	26	1.76
281596--281627	15	2.1	15	100	0	64	12	62	6	18	1.50
284313--284481	59	2.8	59	75	13	152	33	23	2	40	1.67
284610--284783	60	2.9	58	77	5	161	39	5	22	32	1.76
286631--286660	4	7.5	4	100	0	60	76	0	23	0	0.78
287636--287763	66	1.9	66	100	0	256	27	18	8	45	1.79
290200--290325	51	2.5	51	88	1	182	15	33	31	19	1.93
290448--290486	20	2.0	19	90	5	60	30	25	0	43	1.55
290608--290828	110	2.0	111	94	0	390	37	8	9	45	1.67
294051--294122	26	2.8	26	67	25	62	26	6	4	62	1.39
294930--295048	51	2.5	46	79	9	123	29	19	24	26	1.98
301399--301453	14	4.3	13	78	19	62	9	12	27	50	1.70
301413--301460	10	4.4	10	78	19	51	10	12	25	52	1.71
301405--301460	24	2.3	24	96	0	103	10	12	23	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301879--301945	16	4.3	16	92	3	102	10	10	19	59	1.58
301877--301937	32	1.9	32	96	0	113	8	13	22	55	1.64
302007--302047	16	2.7	16	85	7	59	12	7	19	60	1.54
303431--303471	20	2.2	20	86	8	59	31	0	2	65	1.05
303432--303488	30	1.9	30	85	7	80	31	0	3	64	1.10
304944--304977	17	2.0	17	100	0	68	58	0	11	29	1.33
305508--305550	3	14.3	3	85	0	59	34	2	32	30	1.71
307392--307441	26	1.9	26	100	0	100	22	20	28	30	1.98
309053--309142	44	2.0	44	100	0	180	35	15	28	20	1.93
309723--309755	11	2.8	12	86	9	50	42	3	9	45	1.51
309999--310139	68	2.1	68	100	0	282	35	2	9	51	1.50
310307--310365	10	5.6	10	76	11	55	69	5	3	22	1.23
310306--310377	33	2.2	33	85	7	92	68	4	5	22	1.28
310525--310557	11	2.8	12	86	9	50	45	9	3	42	1.51
312540--312568	12	2.4	12	100	0	58	41	31	20	6	1.79
314168--314223	27	2.1	27	93	0	94	51	1	0	46	1.11
314941--315011	33	2.2	31	82	9	81	29	1	5	63	1.26
315183--315236	17	3.2	17	72	0	54	31	0	3	64	1.11
316769--316816	21	2.3	21	85	0	60	25	39	12	22	1.89
316820--316913	21	4.5	21	84	5	118	18	32	27	21	1.96
316796--316913	42	2.8	41	76	14	123	19	33	24	22	1.97
323405--323477	35	2.1	35	97	0	137	34	23	2	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324070--324130	23	2.7	23	86	0	86	32	26	24	16	1.96
327092--327133	17	2.5	17	84	0	57	42	11	16	28	1.84
327189--327244	29	1.9	29	88	0	85	19	41	3	35	1.69
328604--328640	2	18.5	2	100	0	74	51	0	0	48	1.00
338204--338240	19	1.9	19	89	10	58	13	5	2	78	1.03
344112--344505	77	5.1	76	79	5	436	30	15	12	41	1.85
344119--344505	154	2.5	153	91	2	600	30	15	12	41	1.85
344508--345066	39	14.7	39	86	3	621	28	19	15	36	1.93
344999--345158	75	2.1	73	80	10	171	31	20	13	33	1.92
345817--345880	29	2.2	29	85	0	83	21	42	3	32	1.69
347677--347716	14	2.9	14	85	14	57	45	0	2	52	1.14
347677--347717	13	3.1	13	89	10	57	46	0	2	51	1.14
348350--348738	185	2.1	184	90	2	622	45	7	3	42	1.49
348881--348922	15	2.8	15	96	0	75	9	19	28	42	1.82
348865--348919	15	3.0	19	72	25	55	14	16	27	41	1.87
350106--350144	3	13.0	3	94	0	69	64	0	0	35	0.94
353388--353413	4	6.5	4	100	0	52	53	23	0	23	1.46
354590--354614	13	1.9	13	100	0	50	56	12	8	24	1.62
360061--360111	13	3.9	14	76	21	56	35	1	0	62	1.06
363389--363431	22	2.0	21	82	8	52	34	6	20	37	1.80
364541--364601	32	1.9	32	86	0	86	29	18	16	36	1.92
367838--367926	32	2.9	31	88	3	117	26	17	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369429--369468	18	2.2	18	90	0	62	25	20	30	25	1.99
371214--371318	55	1.9	54	82	7	131	46	6	11	35	1.66
371564--371602	2	19.5	2	100	0	78	48	0	0	51	1.00
381586--381611	10	2.6	10	100	0	52	15	30	0	53	1.42
381669--381704	17	2.1	18	94	5	65	27	5	2	63	1.30
383770--383810	3	13.7	3	89	0	64	36	26	34	2	1.70
384032--384116	35	2.5	33	78	14	91	25	8	10	55	1.62
385264--385607	171	2.0	171	98	0	661	33	22	15	28	1.95
388045--388107	29	2.1	29	82	8	74	31	12	26	28	1.93
390497--390529	5	6.4	5	96	3	57	39	0	39	21	1.53
394074--394141	6	12.3	6	80	17	85	1	30	13	54	1.48
394056--394132	21	3.8	21	93	3	122	1	32	10	55	1.42
394074--394147	27	2.7	27	75	8	87	1	31	12	55	1.45
394533--394597	12	5.1	13	85	10	82	56	0	0	43	0.99
394539--394615	3	26.7	3	74	12	72	61	0	0	38	0.96
394900--395466	113	5.0	113	89	1	814	28	19	15	35	1.93
396251--396669	83	5.0	83	95	0	741	36	21	14	27	1.92
408567--408591	7	3.6	7	100	0	50	32	0	0	68	0.90
410176--410255	6	14.2	6	73	21	66	1	32	11	55	1.43
410176--410252	21	3.8	21	93	3	122	1	32	10	55	1.42
410653--410728	3	25.7	3	78	12	77	61	0	0	38	0.96
418170--418207	19	2.0	20	89	5	60	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418465--418513	19	2.7	18	78	6	55	61	2	0	36	1.08
431375--431413	10	3.8	10	89	3	51	0	10	10	79	0.94
431374--431402	11	2.6	11	100	0	58	0	13	6	79	0.93
436056--436106	11	4.5	11	82	4	57	3	5	13	76	1.11
440250--440286	19	1.9	19	94	0	65	32	29	16	21	1.95
440312--440446	20	6.6	20	70	14	78	28	25	19	26	1.99
440393--440467	21	3.6	21	77	10	82	37	25	16	21	1.93
440370--440468	41	2.4	41	89	0	162	36	25	16	22	1.94
441027--441135	20	5.8	20	72	12	79	12	15	22	49	1.78
441103--441142	20	2.0	20	85	0	53	12	10	22	55	1.67
443047--443135	20	4.4	20	89	0	115	32	24	22	20	1.98
443130--443202	33	2.2	34	90	2	112	45	19	21	13	1.85
443169--443206	20	1.9	20	94	0	67	47	18	21	13	1.82
443202--443292	19	4.7	19	82	6	103	15	14	23	47	1.82
443769--443872	21	5.0	21	75	12	79	21	35	17	25	1.95
443776--443887	42	2.7	42	80	8	129	23	36	16	23	1.94
443796--443887	21	4.4	21	68	8	53	23	36	16	22	1.94
445185--445408	67	3.3	67	84	10	239	29	3	15	52	1.59
445258--445408	63	2.3	63	92	4	239	27	3	14	54	1.55
445300--445407	36	3.3	35	69	22	106	27	3	14	53	1.58
445262--445430	67	2.6	63	89	7	239	28	2	15	52	1.58
445482--445559	20	3.9	20	83	6	95	43	25	17	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445482--445559	40	2.0	40	87	5	113	43	25	17	12	1.85
445563--445657	34	2.8	34	82	4	102	18	18	24	37	1.94
445631--445782	20	7.9	20	84	8	190	27	18	21	32	1.97
445598--445782	94	2.0	94	93	0	316	25	18	22	33	1.96
445631--445776	54	2.6	57	85	7	199	26	18	22	32	1.97
445753--446035	140	2.0	140	95	1	505	44	15	11	27	1.82
448378--448431	24	2.2	24	90	0	81	40	18	18	22	1.91
453366--453404	20	2.0	20	100	0	78	28	10	25	35	1.89
459388--459467	20	3.8	21	77	11	74	18	23	32	25	1.97
464354--464766	204	2.0	206	98	0	803	33	20	14	31	1.92

Tables:   1   2   3