Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007906.1 Hibiscus syriacus cultivar Beakdansim tig00110300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  551901

Tables:   1   2   3   

This is table  3  of  3  ( 282 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
473003--473063
22
2.8
23
82
7
65
47
0
0
52
1.00
473322--473359
18
2.0
20
85
10
53
60
0
0
39
0.97
473508--473546
20
2.0
20
84
0
51
33
17
7
41
1.79
473520--473571
15
3.5
15
84
5
70
36
17
7
38
1.78
474581--474616
18
2.0
18
88
0
54
25
19
13
41
1.88
483431--483491
18
3.4
17
77
20
54
77
9
11
1
1.07
483451--483506
14
4.3
13
78
19
55
80
3
14
1
0.93
483462--483506
19
2.4
19
88
0
72
82
2
15
0
0.77
483464--483503
11
3.9
11
78
18
50
82
2
15
0
0.77
486444--486691
55
4.5
55
84
2
284
34
9
14
42
1.77
486447--486735
108
2.6
108
84
3
328
35
8
14
41
1.76
486628--486797
55
3.1
53
75
13
162
32
5
17
44
1.73
486841--486953
42
2.7
41
76
9
120
30
20
17
31
1.96
486988--487197
58
3.6
58
72
8
192
32
12
20
34
1.90
486981--487254
58
4.7
57
71
10
169
32
11
20
35
1.88
486986--487252
116
2.3
117
90
1
403
33
11
19
34
1.89
487430--487467
18
2.1
18
95
0
67
34
21
21
23
1.97
489272--489316
23
2.0
23
86
0
63
20
26
26
26
1.99
495418--495574
64
2.5
64
82
6
176
33
20
17
28
1.95
496163--496207
23
2.0
23
86
0
63
20
26
26
26
1.99
502308--502464
64
2.5
64
82
6
176
33
20
17
28
1.95
503692--504002
137
2.3
138
87
1
426
33
17
21
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
511020--511092
34
2.2
33
78
9
78
49
0
2
47
1.15
515396--515454
28
2.1
28
87
0
82
33
16
15
33
1.91
516628--516674
25
1.9
24
82
4
58
51
6
14
27
1.67
517748--517818
29
2.3
32
83
13
87
45
0
8
46
1.33
519329--519371
19
2.3
18
96
4
77
53
30
16
0
1.43
522143--522213
20
3.6
19
77
9
72
81
4
5
8
0.97
522143--522218
21
3.7
20
75
16
66
81
3
5
9
0.96
522649--522729
42
2.0
41
82
2
99
66
3
4
24
1.28
524739--524807
23
3.0
23
85
4
68
28
26
21
23
1.99
524825--525042
103
2.1
103
99
0
427
37
23
13
26
1.91
526219--526264
21
2.2
21
84
0
56
15
23
28
32
1.95
530196--530265
23
3.0
23
89
0
95
27
27
22
22
1.99
530284--530499
103
2.1
103
99
0
423
36
23
13
26
1.92
531676--531721
21
2.2
21
84
0
56
15
23
28
32
1.95
535655--535724
23
3.0
23
83
4
70
28
27
21
22
1.99
535741--535958
103
2.1
103
100
0
436
36
23
13
26
1.92
537133--537178
21
2.2
21
84
0
56
15
23
28
32
1.95
546871--546900
14
2.1
14
93
0
51
40
6
23
30
1.80
548256--548289
1
34.0
1
93
0
59
0
2
0
97
0.19
548257--548299
7
6.3
7
89
5
52
0
9
0
90
0.45

Tables:   1   2   3

The End!