genome.fa.s7908.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007908.1 Hibiscus syriacus cultivar Beakdansim tig00110302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  529382

Tables:   1   2   3   

This is table  2  of  3  ( 305 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165191--165263	20	3.7	20	83	0	92	23	17	20	38	1.93
167583--167622	21	1.9	21	89	0	62	60	7	30	2	1.38
168040--168149	43	2.6	43	82	0	121	31	22	15	30	1.95
169462--169814	131	2.7	131	79	3	379	40	15	11	32	1.83
171405--171438	17	2.0	17	88	0	50	2	0	41	55	1.15
172313--172350	2	19.0	2	88	0	58	47	2	0	50	1.15
172334--172648	74	4.1	74	79	10	289	43	3	6	46	1.47
172337--172649	37	8.2	36	76	12	261	43	3	6	46	1.47
172704--172752	25	1.9	26	83	4	64	51	2	0	46	1.12
172700--172751	24	2.2	25	82	6	63	48	1	0	50	1.12
178059--178114	22	2.7	20	78	10	58	26	16	32	25	1.96
177967--178172	95	2.2	96	81	4	240	30	15	27	27	1.96
177986--178207	95	2.3	96	80	5	227	30	14	27	27	1.95
178683--179016	68	4.9	68	94	0	560	29	14	25	29	1.95
178957--179585	165	3.9	163	87	2	845	36	12	22	28	1.91
178957--179585	81	7.7	82	87	2	822	36	12	22	28	1.91
178958--179585	246	2.6	244	86	3	850	36	12	22	28	1.91
179641--179678	2	19.0	2	100	0	76	50	0	0	50	1.00
183044--183513	236	2.0	236	99	0	922	29	24	12	33	1.92
187964--188031	27	2.5	27	90	2	109	45	33	7	13	1.71
188030--188092	31	2.0	33	87	12	96	49	20	9	20	1.77
196207--196255	16	3.1	16	81	0	71	48	8	16	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215079--215103	8	3.1	8	100	0	50	88	0	12	0	0.53
218355--218381	13	2.1	13	100	0	54	22	14	14	48	1.81
221214--221262	21	2.3	22	78	3	55	12	12	6	69	1.35
221279--221335	22	2.5	22	81	10	62	7	22	19	50	1.71
227375--227595	114	1.9	114	100	0	442	48	14	13	23	1.78
245508--245554	21	2.5	19	86	13	62	38	2	0	59	1.09
245538--245592	25	2.2	26	86	3	76	36	3	0	60	1.15
246452--246526	9	7.8	9	73	15	53	73	2	9	14	1.19
246415--246509	11	9.1	10	71	24	56	71	3	9	15	1.25
246453--246490	19	2.1	18	85	14	51	76	2	7	13	1.11
246418--246511	29	2.9	34	79	19	103	71	3	8	17	1.24
246444--246523	30	2.7	29	81	12	92	72	3	8	15	1.23
246418--246502	11	7.9	11	71	24	58	70	3	9	16	1.27
246728--246776	17	2.9	17	80	14	57	75	0	12	12	1.05
248552--249661	83	13.3	83	82	6	1165	24	19	21	34	1.96
248536--249657	250	4.5	250	84	4	1329	24	18	21	34	1.96
248542--249660	333	3.4	329	83	4	1309	24	19	21	34	1.96
249436--249607	92	1.9	91	87	1	254	24	17	22	36	1.95
254018--254062	22	2.0	22	91	4	72	26	22	22	28	1.99
254029--254080	22	2.4	22	83	6	61	26	28	21	23	1.99
256250--256344	16	6.0	16	71	21	76	70	3	9	16	1.27
256248--256337	11	8.3	11	70	23	66	68	3	11	16	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256250--256352	30	3.3	30	73	21	86	69	2	9	17	1.28
256947--256987	20	2.0	20	85	0	55	4	29	41	24	1.75
258617--258666	22	2.2	24	78	10	59	56	10	20	14	1.66
258626--258698	23	3.2	23	76	16	71	52	12	19	16	1.75
259651--259715	34	1.9	33	90	3	103	43	9	7	40	1.65
274317--274361	24	2.0	22	82	8	54	35	0	11	53	1.37
278413--278464	22	2.4	22	75	18	54	21	5	1	71	1.17
280184--280307	31	4.0	31	82	8	135	33	18	18	29	1.95
280185--280307	63	2.0	63	83	6	160	34	17	18	29	1.94
284787--284889	31	3.3	31	82	5	118	34	21	13	30	1.92
284806--284909	31	3.3	31	86	2	145	36	20	17	25	1.94
285860--285902	23	1.9	22	86	13	61	44	16	2	37	1.60
286644--286668	12	2.1	12	100	0	50	32	8	8	52	1.60
289213--289256	15	2.9	16	80	10	56	25	6	0	68	1.14
289213--289282	5	13.6	5	71	5	50	24	7	1	67	1.24
290210--290421	54	4.0	51	84	7	264	41	17	8	32	1.78
290211--290434	52	4.2	54	84	7	280	42	16	8	32	1.79
290210--290458	107	2.3	107	82	6	308	41	17	8	32	1.80
290623--291670	2	529.5	2	97	2	1983	0	0	49	50	1.03
291644--291840	4	49.5	4	90	1	261	24	4	25	45	1.72
291839--291892	4	13.5	4	100	0	108	0	24	50	25	1.50
293622--293709	8	11.3	7	78	19	61	4	15	0	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293613--293735	34	3.7	35	76	19	120	5	17	0	77	0.96
298955--299013	29	2.0	29	83	6	73	54	11	11	22	1.69
299281--299307	4	6.8	4	100	0	54	77	0	22	0	0.76
300138--300240	31	3.2	32	90	4	172	38	17	11	32	1.86
301634--301701	33	2.1	33	100	0	136	33	8	11	45	1.72
303748--303907	80	2.0	80	95	0	284	21	21	14	42	1.88
306429--306593	80	2.0	84	86	9	232	26	34	12	26	1.92
312352--312419	21	3.2	21	87	0	100	10	52	17	19	1.72
323177--323272	37	2.6	37	96	0	174	28	7	4	60	1.42
324934--324982	24	2.0	24	88	8	71	61	4	4	30	1.33
331816--332102	144	2.0	142	92	1	475	41	18	8	31	1.81
355721--355804	42	2.0	42	100	0	168	21	23	19	35	1.96
357696--357746	14	3.9	14	75	19	56	9	9	23	56	1.61
357697--357752	24	2.3	24	93	0	94	10	10	21	57	1.63
357697--357765	24	2.9	24	88	0	84	11	10	18	59	1.60
358841--358902	16	4.1	16	87	8	85	9	11	20	58	1.61
358844--358890	15	3.1	15	93	3	76	8	12	23	55	1.64
358963--358995	16	2.1	16	100	0	66	6	12	24	57	1.57
359140--359204	18	3.5	18	78	18	62	33	1	1	63	1.13
360495--360586	14	6.6	14	77	13	84	40	2	2	55	1.24
360502--360586	20	4.5	19	74	18	72	38	2	2	56	1.25
360502--360586	3	29.7	3	71	13	54	38	2	2	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360495--360600	54	2.0	53	87	9	153	38	2	2	55	1.29
363670--363714	14	3.1	14	81	12	54	75	0	8	15	1.03
363687--363766	9	9.7	9	77	15	75	80	0	3	16	0.86
363673--363757	24	3.6	23	79	4	89	78	0	4	16	0.91
363687--363766	33	2.4	34	85	8	112	80	0	3	16	0.86
363679--363766	26	3.7	22	68	22	52	79	0	5	14	0.91
363673--363766	8	11.6	8	76	10	68	78	0	5	15	0.92
363727--363774	18	2.6	18	83	9	62	81	0	8	10	0.88
364747--365208	55	8.4	55	95	1	822	29	14	25	30	1.95
365193--365455	56	4.8	56	84	5	329	34	20	24	20	1.97
364747--365366	110	5.6	110	90	3	693	31	15	25	27	1.95
364747--365444	165	4.2	167	86	5	748	31	16	25	26	1.96
364856--365472	110	5.6	111	86	5	361	31	16	25	25	1.96
365620--365714	14	6.9	14	77	12	72	41	1	2	55	1.18
365627--365714	3	30.7	3	77	8	76	39	1	2	56	1.19
370154--370178	13	1.9	13	100	0	50	72	8	0	20	1.10
372349--372420	28	2.6	29	81	16	89	63	2	0	33	1.08
372386--372419	17	1.9	18	88	5	52	64	5	0	29	1.17
372434--372476	10	4.3	10	78	0	50	41	0	30	27	1.56
377972--378020	24	2.0	24	88	0	71	34	4	6	55	1.44
381892--381916	2	12.5	2	100	0	50	48	0	0	52	1.00
382052--382105	25	2.2	24	78	12	58	35	3	1	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389418--389491	37	2.0	37	100	0	148	40	5	27	27	1.78
395759--395809	20	2.5	20	78	9	59	27	23	13	35	1.93
396749--396802	24	2.2	24	90	0	81	25	18	14	40	1.89
397042--397072	3	10.3	3	100	0	62	64	0	35	0	0.94
399163--399196	12	2.8	12	95	0	59	55	26	0	17	1.42
399162--399196	18	1.9	18	94	0	61	57	25	0	17	1.40
399380--399444	26	2.5	26	100	0	130	32	15	18	33	1.92
400220--400313	20	5.1	20	75	17	76	41	25	12	20	1.87
400211--400293	34	2.5	33	86	3	105	43	26	12	18	1.84
400318--400357	20	2.0	20	95	0	71	15	7	20	57	1.61

Tables:   1   2   3