genome.fa.s7908.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007908.1 Hibiscus syriacus cultivar Beakdansim tig00110302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  529382

Tables:   1   2   3   

This is table  3  of  3  ( 305 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400338--400389	14	3.8	14	84	2	70	15	7	26	50	1.71
404563--404774	21	10.1	21	80	6	232	33	32	11	22	1.89
404563--404761	42	4.7	42	89	1	292	34	32	12	21	1.90
404876--405081	42	5.0	42	82	1	220	25	12	36	25	1.91
407397--407473	20	3.8	20	68	11	59	40	12	22	24	1.89
407527--407596	20	3.6	19	76	5	68	30	14	22	32	1.94
418889--418975	38	2.3	38	84	4	104	14	20	12	51	1.75
419049--419084	15	2.4	15	90	0	54	30	0	2	66	1.06
419471--419515	22	2.0	22	82	0	54	48	2	4	44	1.35
422753--422792	2	20.0	2	100	0	80	50	0	0	50	1.00
423003--423101	23	4.2	23	75	13	78	65	6	1	27	1.22
423051--423101	25	2.1	25	85	10	70	66	3	1	27	1.20
423817--423855	6	6.2	6	82	11	51	82	0	0	17	0.68
424905--425030	47	2.8	45	84	5	155	29	23	7	38	1.83
425135--425255	40	3.0	40	95	1	217	33	25	16	24	1.96
427906--427943	19	2.0	19	85	10	51	23	0	5	71	1.07
432046--432104	30	2.0	29	83	9	75	35	6	22	35	1.80
432332--432399	23	3.0	23	86	0	100	17	25	26	30	1.97
435076--435114	15	2.4	17	87	8	55	61	2	2	33	1.23
448444--448506	23	2.7	23	80	4	74	38	23	22	15	1.93
450102--450152	26	2.0	25	88	3	75	37	29	0	33	1.58
453355--453444	21	4.2	21	73	5	72	35	25	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453368--453452	44	1.9	44	83	4	109	35	24	18	21	1.96
454563--454613	26	2.0	25	88	3	75	37	29	0	33	1.58
455998--456048	26	2.0	26	88	3	77	37	29	0	33	1.58
457175--457216	17	2.4	18	84	8	59	64	21	0	14	1.29
461386--461512	64	2.0	64	98	0	245	31	24	15	28	1.96
468190--468473	153	1.9	153	91	0	469	33	24	12	29	1.92
468931--469033	6	17.2	6	100	0	206	16	50	0	33	1.45
469674--469720	20	2.4	19	82	10	67	53	10	17	19	1.72
469462--469934	181	2.6	182	91	0	732	41	13	17	27	1.87
469864--469906	20	2.3	19	88	11	63	51	11	16	20	1.75
472122--472174	21	2.5	21	96	0	97	43	9	32	15	1.78
474011--474078	19	3.6	19	95	0	118	32	1	10	55	1.42
474311--475274	200	4.8	200	94	0	1651	36	14	18	30	1.91
476744--476801	6	9.7	6	84	0	62	39	5	32	22	1.76
476757--476802	3	15.3	3	81	0	56	36	4	32	26	1.76
476744--476801	18	3.2	18	85	0	71	39	5	32	22	1.76
476744--476801	12	4.8	12	86	0	71	39	5	32	22	1.76
478012--479323	183	7.2	183	95	0	2314	35	14	16	33	1.89
479205--479440	120	2.0	120	94	0	418	32	12	15	39	1.85
479022--479612	303	2.0	303	95	0	1056	35	13	15	35	1.88
482439--483107	260	2.6	260	96	0	1230	37	14	17	30	1.90
483753--483825	23	3.2	23	92	0	110	35	4	20	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484242--484291	23	2.2	23	96	0	91	34	8	22	36	1.83
483338--484694	489	2.8	472	92	3	2226	41	7	10	40	1.67
485689--485857	60	2.8	59	77	7	180	42	4	20	32	1.73
486573--486658	28	3.0	28	79	5	109	43	10	3	43	1.56
507145--507202	20	2.7	20	86	10	71	27	20	20	31	1.98
510627--510675	23	2.1	24	84	3	64	34	26	16	22	1.95
510905--510957	28	2.0	26	85	14	72	41	20	5	32	1.76
511305--511342	20	1.9	20	94	0	67	26	18	21	34	1.96
511350--511490	64	2.2	63	79	7	142	26	24	17	31	1.97
512732--512764	16	2.0	17	88	5	50	12	24	0	63	1.28
514789--514837	23	2.1	24	84	3	64	34	26	16	22	1.95
515066--515118	28	2.0	26	85	14	72	41	20	5	32	1.76
515466--515503	20	1.9	20	94	0	67	26	18	21	34	1.96
515511--515651	64	2.2	63	79	7	142	26	24	17	31	1.97
516893--516925	16	2.0	17	88	5	50	12	24	0	63	1.28
518624--518663	2	20.0	2	100	0	80	50	0	0	50	1.00
519205--519253	23	2.1	24	84	3	64	34	26	16	22	1.95
519879--519916	20	1.9	20	100	0	76	23	23	21	31	1.98
524294--524338	3	15.0	3	81	9	56	35	0	2	62	1.08
524302--524355	21	2.6	21	82	2	65	29	1	3	64	1.21
524625--524666	20	2.0	21	86	4	59	9	7	4	78	1.08

Tables:   1   2   3

The End!